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Report for CCDS25962.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25962.1 Public Mus musculus 12 Timm9 23 108 98 CCDS HistoryNCBI Gene:30056Re-query CCDS DB by CCDS ID:25962.1Re-query CCDS DB by GeneID:30056See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25962.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021486.9 ENSMUSP00000021486.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021486.9Link to Ensembl Protein Viewer:ENSMUSP00000021486.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000021486Re-query CCDS DB by Protein ID:ENSMUSP00000021486
Original member Current member EBI ENSMUST00000166120.8 ENSMUSP00000126298.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166120.8Link to Ensembl Protein Viewer:ENSMUSP00000126298.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166120Re-query CCDS DB by Protein ID:ENSMUSP00000126298
Original member Current member EBI ENSMUST00000220482.1 ENSMUSP00000152114.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000220482.1Link to Ensembl Protein Viewer:ENSMUSP00000152114.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000220482Re-query CCDS DB by Protein ID:ENSMUSP00000152114
Original member Current member EBI ENSMUST00000221559.1 ENSMUSP00000152455.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000221559.1Link to Ensembl Protein Viewer:ENSMUSP00000152455.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000221559Re-query CCDS DB by Protein ID:ENSMUSP00000152455
Original member Current member EBI ENSMUST00000221367.1 ENSMUSP00000152574.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000221367.1Link to Ensembl Protein Viewer:ENSMUSP00000152574.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000221367Re-query CCDS DB by Protein ID:ENSMUSP00000152574
Original member Current member NCBI NM_001024853.1 NP_001020024.1 Accepted alive Link to Nucleotide Sequence:NM_001024853.1Link to Protein Sequence:NP_001020024.1Re-query CCDS DB by Nucleotide ID:NM_001024853Re-query CCDS DB by Protein ID:NP_001020024Link to BLAST:NP_001020024.1
Original member Current member NCBI NM_001024854.1 NP_001020025.1 Accepted alive Link to Nucleotide Sequence:NM_001024854.1Link to Protein Sequence:NP_001020025.1Re-query CCDS DB by Nucleotide ID:NM_001024854Re-query CCDS DB by Protein ID:NP_001020025Link to BLAST:NP_001020025.1
Original member Current member NCBI NM_001286203.2 NP_001273132.1 Accepted alive Link to Nucleotide Sequence:NM_001286203.2Link to Protein Sequence:NP_001273132.1Re-query CCDS DB by Nucleotide ID:NM_001286203Re-query CCDS DB by Protein ID:NP_001273132Link to BLAST:NP_001273132.1
Original member Current member NCBI NM_013896.3 NP_038924.1 Accepted alive Link to Nucleotide Sequence:NM_013896.3Link to Protein Sequence:NP_038924.1Re-query CCDS DB by Nucleotide ID:NM_013896Re-query CCDS DB by Protein ID:NP_038924Link to BLAST:NP_038924.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020024.1 89 Q9WV98 89 100% 0 0
NP_001020025.1 89 Q9WV98 89 100% 0 0
NP_001273132.1 89 Q9WV98 89 100% 0 0
NP_038924.1 89 Q9WV98 89 100% 0 0

Chromosomal Locations for CCDS 25962.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 71123552 71123686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71125462 71125557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71126333 71126371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (270 nt):
ATGGCTGCACAGATACCGGAATCTGACCAGATAAAACAGTTTAAGGAGTTCCTGGGAACCTACAATAAAC
TTACAGAAACCTGCTTTTTGGACTGTGTTAAAGACTTCACAACAAGAGAGGTGAAACCTGAAGAGGTGAC
CTGTTCAGAACATTGCTTACAGAAATATTTAAAAATGACACAGAGGATATCCGTGAGATTTCAGGAATAT
CACATTCAGCAGAATGAAGCCCTGGCAGCCAAAGCAGGCCTCCTGGGCCAGCCACGGTAG

Translation (89 aa):
MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEEVTCSEHCLQKYLKMTQRISVRFQEY
HIQQNEALAAKAGLLGQPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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