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Report for CCDS19472.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19472.1 Public Mus musculus 5 Cds1 23 108 98 CCDS HistoryNCBI Gene:74596Re-query CCDS DB by CCDS ID:19472.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19472.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031273.8 ENSMUSP00000031273.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031273.8Link to Ensembl Protein Viewer:ENSMUSP00000031273.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031273Re-query CCDS DB by Protein ID:ENSMUSP00000031273
Original member NCBI NM_173370.3 NP_775546.2 Updated not alive Link to Nucleotide Sequence:NM_173370.3Link to Protein Sequence:NP_775546.2Re-query CCDS DB by Nucleotide ID:NM_173370Re-query CCDS DB by Protein ID:NP_775546
Current member NCBI NM_173370.4 NP_775546.2 Accepted alive Link to Nucleotide Sequence:NM_173370.4Link to Protein Sequence:NP_775546.2Re-query CCDS DB by Nucleotide ID:NM_173370Re-query CCDS DB by Protein ID:NP_775546Link to BLAST:NP_775546.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775546.2 461 P98191 461 100% 0 0

Chromosomal Locations for CCDS 19472.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 101765373 101765489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 101781375 101781502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 101791475 101791571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 101797004 101797101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 101798377 101798516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 101806563 101806621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 101808666 101808748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 101809886 101809973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 101812495 101812563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 101814400 101814552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 101815849 101815968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 101817853 101817956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 101821434 101821563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGCTGGAGCTGCGGCACCGCGGGGGCTGCCCCGGCCCTGGGGGAGCGGGGGCGCCGCCACCCCGCGAGG
GAGAGGCGGCCGGCGGTGACCACGAAACCGAGAGCACCAGCGACAAAGAAACAGATATTGATGACAGGTA
TGGAGATCTCGATGCCAGAGGCGATTCCGACGTGCCTGAGGTCCCACCGTCCTCAGACAGGACCCCCGAG
ATTCTCAAGAAAGCCCTGTCCGGACTATCTTCAAGATGGAAGAACTGGTGGATTCGCGGGATCCTCACCC
TCACCATGATCTCCCTCTTCTTCCTGATTATCTATATGGGGTCCTTCATGCTGATGCTTCTGGTTCTGGG
CATCCAAGTGAAGTGCTTCCATGAGATCATCACCATCGGGTACCGGGTCTACCACTCCTACGACCTCCCA
TGGTTTAGGACACTAAGTTGGTACTTCCTCCTGTGTGTGAACTACTTCTTCTATGGAGAGACGGTGGCAG
ATTACTTCGCCACGTTTGTTCAGAGGGAGGAGCAGCTGCAGTTCCTCATTCGCTACCACAGGTTCATATC
CTTCGCCCTCTACCTGGCAGGTTTCTGCATGTTTGTCCTGAGCCTGGTGAAGAAGCACTACAGACTGCAG
TTCTATATGTTCGCATGGACGCACGTCACTTTACTGATAACCGTCACTCAGTCACATCTTGTCATCCAAA
ATCTGTTTGAAGGCATGATATGGTTCCTTGTTCCCATATCAAGCGTCATCTGCAATGACATCACAGCTTA
TCTTTTTGGATTTTTTTTTGGAAGAACTCCTCTAATTAAGCTGTCTCCTAAGAAGACTTGGGAAGGATTC
ATTGGTGGTTTCTTCTCCACAGTCATATTTGGATTCATTGCTGCCTATGTGTTGTCCAAGTACCAGTACT
TTGTGTGCCCGGTGGAATACCGAAGCGACGTCAACTCCTTCGTGACAGAGTGTGAGCCCTCAGAACTGTT
CCAGCTTCAGAATTACTCCCTCCCTCCATTCCTACAGGCAGTGCTGAGCCGGGAGACTGTGAGCTTGTAC
CCCTTCCAGATACACAGCATTGCCCTTTCAACGTTCGCGTCACTGATTGGCCCATTTGGAGGCTTCTTTG
CCAGTGGATTCAAAAGAGCTTTCAAAATCAAGGATTTTGCAAACACGATTCCTGGACATGGCGGGATAAT
GGACAGGTTTGACTGTCAGTATTTGATGGCAACGTTCGTGCACGTGTACATCACCAGCTTCATCAGGGGT
CCGAATCCCAGCAAAGTGCTCCAGCAGCTGTTAGTGCTTCAACCAGAACAGCAGTTAAATATCTACAGAA
CCCTGAAGATTCATCTCACCGAGAAAGGGATCCTGCAGCCCACCTTGAAGGTGTAG

Translation (461 aa):
MLELRHRGGCPGPGGAGAPPPREGEAAGGDHETESTSDKETDIDDRYGDLDARGDSDVPEVPPSSDRTPE
ILKKALSGLSSRWKNWWIRGILTLTMISLFFLIIYMGSFMLMLLVLGIQVKCFHEIITIGYRVYHSYDLP
WFRTLSWYFLLCVNYFFYGETVADYFATFVQREEQLQFLIRYHRFISFALYLAGFCMFVLSLVKKHYRLQ
FYMFAWTHVTLLITVTQSHLVIQNLFEGMIWFLVPISSVICNDITAYLFGFFFGRTPLIKLSPKKTWEGF
IGGFFSTVIFGFIAAYVLSKYQYFVCPVEYRSDVNSFVTECEPSELFQLQNYSLPPFLQAVLSRETVSLY
PFQIHSIALSTFASLIGPFGGFFASGFKRAFKIKDFANTIPGHGGIMDRFDCQYLMATFVHVYITSFIRG
PNPSKVLQQLLVLQPEQQLNIYRTLKIHLTEKGILQPTLKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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