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Report for CCDS85544.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85544.1 Public Mus musculus 8 Klhl2 23 108 98 CCDS HistoryNCBI Gene:77113Re-query CCDS DB by CCDS ID:85544.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85544.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034017.8 ENSMUSP00000034017.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034017.8Link to Ensembl Protein Viewer:ENSMUSP00000034017.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034017Re-query CCDS DB by Protein ID:ENSMUSP00000034017
Original member Current member NCBI NM_178633.3 NP_848748.2 Accepted alive Link to Nucleotide Sequence:NM_178633.3Link to Protein Sequence:NP_848748.2Re-query CCDS DB by Nucleotide ID:NM_178633Re-query CCDS DB by Protein ID:NP_848748Link to BLAST:NP_848748.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848748.2 593 Q8JZP3 593 100% 0 0

Chromosomal Locations for CCDS 85544.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 64740946 64740974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64742955 64743098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64749032 64749172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64749695 64749823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64751729 64751830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64752649 64752846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64754285 64754402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64758092 64758241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64759733 64759849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64764123 64764232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64779698 64779860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64811680 64811801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64822991 64823097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64834443 64834568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64849633 64849658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1782 nt):
ATGGAGACGCCGCCACTGCCTCCCGCATGCACAAAGCAGGGTCATCAGAAGCCCCTCGATTCAAAAGACG
AGAATCCTGAGAAACATTGCCCACTGACGGTGAACCCCTGGCACATGAAGAAAGCCTTTAAAGTCATGAA
CGAACTCAGAAGTCAAAATCTGCTGTGTGACGTCACGATTGTGGCAGAAGACATGGAGATCCCTGCTCAC
CGCGTGGTGCTGGCGGCCTGCAGTCCGTACTTCCACGCCATGTTTACAGGTGAGATGAGCGAGAGCCGAG
CAAAGAGAGTTCGAATAAAGGAGGTGGACGGCTGGACCCTGAGGATGCTGGTCGATTACGTTTACACGGC
AGAGATTCAGGTCACAGAGGAGAACGTGCAGGTCCTCCTCCCAGCAGCTGGCCTGCTACAGTTACAGGAT
GTGAAGAAGACATGCTGTGAATTTTTAGAATCCCAGCTTCACCCTGTCAACTGCTTAGGAATCCGGGCTT
TTGCTGATATGCATGCATGCACAGACCTCCTGAATAAGGCCAACACGTATGCAGAACAACATTTTGCAGA
TGTCGTACTTAGTGAAGAGTTTCTTAACCTCGGCATCGAGCAGGTGTGCAGCTTAATCTCCAGTGATAAA
CTCACCATTTCCTCCGAGGAGAAGGTATTTGAAGCAGTCATCGCCTGGGTAAACCACGATAAGGACGTAA
GACAGGAGTTCATGGCTCGGCTCATGGAGCATGTCCGATTACCTCTGCTTCCTCGGGAGTACTTGGTGCA
GCGGGTTGAAGAGGAAGCATTGGTGAAGAACAGCAGTGCGTGCAAAGATTACCTCATTGAAGCCATGAAG
TACCACCTGCTGCCGACAGAGCAGCGCATGTTAATGAAGAGCGTGCGGACCCGCCTGAGGACGCCCATGA
ACCTTCCCAAATTGATGGTGGTGGTCGGGGGCCAGGCACCAAAGGCTATCCGAAGTGTGGAATGCTACGA
CTTCAAAGAAGAACGGTGGCACCAGGTGGCAGAGCTGCCTTCCAGGAGGTGCAGGGCAGGGATGGTCTAT
ATGGCTGGGCTGGTCTTTGCTGTTGGTGGCTTCAATGGCTCACTAAGAGTTCGCACTGTAGATTCCTATG
ACCCCGTGAAAGACCAGTGGACCAGCGTGGCGAACATGCGAGACCGAAGAAGCACACTTGGAGCCGCGGT
GCTGAATGGGCTGCTGTACGCCGTGGGGGGCTTTGACGGCAGCACAGGTCTATCGTCTGTGGAAGCATAC
AACATAAAATCTAATGAGTGGTTTCATGTCGCCCCAATGAACACGAGGAGGAGCAGTGTGGGTGTTGGCG
TTGTTGGAGGTTTGCTCTATGCCGTGGGGGGTTACGATGGAGCATCGCGCCAGTGTCTTAGCACAGTAGA
ATGCTATAATGCTACTGCAAACGAGTGGACTTACATAGCAGAAATGAGCACCAGACGGAGCGGAGCAGGT
GTTGGTGTGTTAAACAACTTATTATATGCTGTAGGAGGTCATGATGGTCCTTTAGTACGAAAAAGTGTTG
AAGTATATGACCCCACCACAAATGCCTGGAGACAGGTTGCAGATATGAACATGTGCAGAAGAAATGCAGG
TGTCTGTGCAGTTAATGGTCTGTTGTATGTTGTCGGAGGAGATGATGGTTCCTGTAACTTGGCGTCGGTA
GAGTATTATAACCCCACCACGGATAAATGGACAGTTGTGTCCTCTTGTATGAGCACGGGGAGAAGCTACG
CAGGGGTCACAGTTATTGATAAACCGTTATGA

Translation (593 aa):
METPPLPPACTKQGHQKPLDSKDENPEKHCPLTVNPWHMKKAFKVMNELRSQNLLCDVTIVAEDMEIPAH
RVVLAACSPYFHAMFTGEMSESRAKRVRIKEVDGWTLRMLVDYVYTAEIQVTEENVQVLLPAAGLLQLQD
VKKTCCEFLESQLHPVNCLGIRAFADMHACTDLLNKANTYAEQHFADVVLSEEFLNLGIEQVCSLISSDK
LTISSEEKVFEAVIAWVNHDKDVRQEFMARLMEHVRLPLLPREYLVQRVEEEALVKNSSACKDYLIEAMK
YHLLPTEQRMLMKSVRTRLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY
MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAY
NIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDGASRQCLSTVECYNATANEWTYIAEMSTRRSGAG
VGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASV
EYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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