NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1517.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1517.1 Public Homo sapiens 1 ESRRG 24 110 108 CCDS HistoryNCBI Gene:2104Re-query CCDS DB by CCDS ID:1517.1Re-query CCDS DB by GeneID:2104See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1517.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359162.6 ENSP00000352077.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359162.6Link to Ensembl Protein Viewer:ENSP00000352077.2Re-query CCDS DB by Nucleotide ID:ENST00000359162Re-query CCDS DB by Protein ID:ENSP00000352077
Original member Current member EBI ENST00000360012.7 ENSP00000353108.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360012.7Link to Ensembl Protein Viewer:ENSP00000353108.3Re-query CCDS DB by Nucleotide ID:ENST00000360012Re-query CCDS DB by Protein ID:ENSP00000353108
Original member Current member EBI ENST00000361395.6 ENSP00000354584.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361395.6Link to Ensembl Protein Viewer:ENSP00000354584.2Re-query CCDS DB by Nucleotide ID:ENST00000361395Re-query CCDS DB by Protein ID:ENSP00000354584
Original member Current member EBI ENST00000361525.7 ENSP00000355225.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361525.7Link to Ensembl Protein Viewer:ENSP00000355225.3Re-query CCDS DB by Nucleotide ID:ENST00000361525Re-query CCDS DB by Protein ID:ENSP00000355225
Original member Current member EBI ENST00000366938.6 ENSP00000355905.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366938.6Link to Ensembl Protein Viewer:ENSP00000355905.2Re-query CCDS DB by Nucleotide ID:ENST00000366938Re-query CCDS DB by Protein ID:ENSP00000355905
Original member Current member EBI ENST00000366940.6 ENSP00000355907.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366940.6Link to Ensembl Protein Viewer:ENSP00000355907.2Re-query CCDS DB by Nucleotide ID:ENST00000366940Re-query CCDS DB by Protein ID:ENSP00000355907
Original member Current member EBI ENST00000391890.7 ENSP00000375761.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000391890.7Link to Ensembl Protein Viewer:ENSP00000375761.4Re-query CCDS DB by Nucleotide ID:ENST00000391890Re-query CCDS DB by Protein ID:ENSP00000375761
Original member Current member EBI ENST00000493748.5 ENSP00000417374.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000493748.5Link to Ensembl Protein Viewer:ENSP00000417374.1Re-query CCDS DB by Nucleotide ID:ENST00000493748Re-query CCDS DB by Protein ID:ENSP00000417374
Original member Current member EBI ENST00000487276.5 ENSP00000419155.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000487276.5Link to Ensembl Protein Viewer:ENSP00000419155.1Re-query CCDS DB by Nucleotide ID:ENST00000487276Re-query CCDS DB by Protein ID:ENSP00000419155
Original member Current member EBI ENST00000493603.5 ENSP00000419594.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000493603.5Link to Ensembl Protein Viewer:ENSP00000419594.1Re-query CCDS DB by Nucleotide ID:ENST00000493603Re-query CCDS DB by Protein ID:ENSP00000419594
Original member Current member EBI ENST00000616180.4 ENSP00000481528.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000616180.4Link to Ensembl Protein Viewer:ENSP00000481528.1Re-query CCDS DB by Nucleotide ID:ENST00000616180Re-query CCDS DB by Protein ID:ENSP00000481528
Original member Current member NCBI NM_001134285.3 NP_001127757.1 Accepted alive Link to Nucleotide Sequence:NM_001134285.3Link to Protein Sequence:NP_001127757.1Re-query CCDS DB by Nucleotide ID:NM_001134285Re-query CCDS DB by Protein ID:NP_001127757Link to BLAST:NP_001127757.1
Original member Current member NCBI NM_001243509.2 NP_001230438.1 Accepted alive Link to Nucleotide Sequence:NM_001243509.2Link to Protein Sequence:NP_001230438.1Re-query CCDS DB by Nucleotide ID:NM_001243509Re-query CCDS DB by Protein ID:NP_001230438Link to BLAST:NP_001230438.1
Original member Current member NCBI NM_001243510.3 NP_001230439.1 Accepted alive Link to Nucleotide Sequence:NM_001243510.3Link to Protein Sequence:NP_001230439.1Re-query CCDS DB by Nucleotide ID:NM_001243510Re-query CCDS DB by Protein ID:NP_001230439Link to BLAST:NP_001230439.1
Original member Current member NCBI NM_001243511.3 NP_001230440.1 Accepted alive Link to Nucleotide Sequence:NM_001243511.3Link to Protein Sequence:NP_001230440.1Re-query CCDS DB by Nucleotide ID:NM_001243511Re-query CCDS DB by Protein ID:NP_001230440Link to BLAST:NP_001230440.1
Original member Current member NCBI NM_001243512.1 NP_001230441.1 Accepted alive Link to Nucleotide Sequence:NM_001243512.1Link to Protein Sequence:NP_001230441.1Re-query CCDS DB by Nucleotide ID:NM_001243512Re-query CCDS DB by Protein ID:NP_001230441Link to BLAST:NP_001230441.1
Original member Current member NCBI NM_001243513.1 NP_001230442.1 Accepted alive Link to Nucleotide Sequence:NM_001243513.1Link to Protein Sequence:NP_001230442.1Re-query CCDS DB by Nucleotide ID:NM_001243513Re-query CCDS DB by Protein ID:NP_001230442Link to BLAST:NP_001230442.1
Original member Current member NCBI NM_001243514.2 NP_001230443.1 Accepted alive Link to Nucleotide Sequence:NM_001243514.2Link to Protein Sequence:NP_001230443.1Re-query CCDS DB by Nucleotide ID:NM_001243514Re-query CCDS DB by Protein ID:NP_001230443Link to BLAST:NP_001230443.1
Original member Current member NCBI NM_001243515.2 NP_001230444.1 Accepted alive Link to Nucleotide Sequence:NM_001243515.2Link to Protein Sequence:NP_001230444.1Re-query CCDS DB by Nucleotide ID:NM_001243515Re-query CCDS DB by Protein ID:NP_001230444Link to BLAST:NP_001230444.1
Original member Current member NCBI NM_001243519.2 NP_001230448.1 Accepted alive Link to Nucleotide Sequence:NM_001243519.2Link to Protein Sequence:NP_001230448.1Re-query CCDS DB by Nucleotide ID:NM_001243519Re-query CCDS DB by Protein ID:NP_001230448Link to BLAST:NP_001230448.1
Original member Current member NCBI NM_001350122.2 NP_001337051.1 Accepted alive Link to Nucleotide Sequence:NM_001350122.2Link to Protein Sequence:NP_001337051.1Re-query CCDS DB by Nucleotide ID:NM_001350122Re-query CCDS DB by Protein ID:NP_001337051Link to BLAST:NP_001337051.1
Original member Current member NCBI NM_001350123.2 NP_001337052.1 Accepted alive Link to Nucleotide Sequence:NM_001350123.2Link to Protein Sequence:NP_001337052.1Re-query CCDS DB by Nucleotide ID:NM_001350123Re-query CCDS DB by Protein ID:NP_001337052Link to BLAST:NP_001337052.1
Original member Current member NCBI NM_001350124.2 NP_001337053.1 Accepted alive Link to Nucleotide Sequence:NM_001350124.2Link to Protein Sequence:NP_001337053.1Re-query CCDS DB by Nucleotide ID:NM_001350124Re-query CCDS DB by Protein ID:NP_001337053Link to BLAST:NP_001337053.1
Original member Current member NCBI NM_001350125.2 NP_001337054.1 Accepted alive Link to Nucleotide Sequence:NM_001350125.2Link to Protein Sequence:NP_001337054.1Re-query CCDS DB by Nucleotide ID:NM_001350125Re-query CCDS DB by Protein ID:NP_001337054Link to BLAST:NP_001337054.1
Original member Current member NCBI NM_206594.3 NP_996317.1 Accepted alive Link to Nucleotide Sequence:NM_206594.3Link to Protein Sequence:NP_996317.1Re-query CCDS DB by Nucleotide ID:NM_206594Re-query CCDS DB by Protein ID:NP_996317Link to BLAST:NP_996317.1
Original member Current member NCBI NM_206595.3 NP_996318.1 Accepted alive Link to Nucleotide Sequence:NM_206595.3Link to Protein Sequence:NP_996318.1Re-query CCDS DB by Nucleotide ID:NM_206595Re-query CCDS DB by Protein ID:NP_996318Link to BLAST:NP_996318.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001127757.1 435 P62508-2 435 100% 0 0
NP_001230438.1 435 P62508-2 435 100% 0 0
NP_001230439.1 435 P62508-2 435 100% 0 0
NP_001230440.1 435 P62508-2 435 100% 0 0
NP_001230441.1 435 P62508-2 435 100% 0 0
NP_001230442.1 435 P62508-2 435 100% 0 0
NP_001230443.1 435 P62508-2 435 100% 0 0
NP_001230444.1 435 P62508-2 435 100% 0 0
NP_001230448.1 435 P62508-2 435 100% 0 0
NP_001337051.1 435 P62508-2 435 100% 0 0
NP_001337052.1 435 P62508-2 435 100% 0 0
NP_001337053.1 435 P62508-2 435 100% 0 0
NP_001337054.1 435 P62508-2 435 100% 0 0
NP_996317.1 435 P62508-2 435 100% 0 0
NP_996318.1 435 P62508-2 435 100% 0 0

Chromosomal Locations for CCDS 1517.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 216506939 216507183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 216519152 216519421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 216564219 216564380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 216567988 216568098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 216650973 216651089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 216677076 216677478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1308 nt):
ATGTCAAACAAAGATCGACACATTGATTCCAGCTGTTCGTCCTTCATCAAGACGGAACCTTCCAGCCCAG
CCTCCCTGACGGACAGCGTCAACCACCACAGCCCTGGTGGCTCTTCAGACGCCAGTGGGAGCTACAGTTC
AACCATGAATGGCCATCAGAACGGACTTGACTCGCCACCTCTCTACCCTTCTGCTCCTATCCTGGGAGGT
AGTGGGCCTGTCAGGAAACTGTATGATGACTGCTCCAGCACCATTGTTGAAGATCCCCAGACCAAGTGTG
AATACATGCTCAACTCGATGCCCAAGAGACTGTGTTTAGTGTGTGGTGACATCGCTTCTGGGTACCACTA
TGGGGTAGCATCATGTGAAGCCTGCAAGGCATTCTTCAAGAGGACAATTCAAGGCAATATAGAATACAGC
TGCCCTGCCACGAATGAATGTGAAATCACAAAGCGCAGACGTAAATCCTGCCAGGCTTGCCGCTTCATGA
AGTGTTTAAAAGTGGGCATGCTGAAAGAAGGGGTGCGTCTTGACAGAGTACGTGGAGGTCGGCAGAAGTA
CAAGCGCAGGATAGATGCGGAGAACAGCCCATACCTGAACCCTCAGCTGGTTCAGCCAGCCAAAAAGCCA
TATAACAAGATTGTCTCACATTTGTTGGTGGCTGAACCGGAGAAGATCTATGCCATGCCTGACCCTACTG
TCCCCGACAGTGACATCAAAGCCCTCACTACACTGTGTGACTTGGCCGACCGAGAGTTGGTGGTTATCAT
TGGATGGGCGAAGCATATTCCAGGCTTCTCCACGCTGTCCCTGGCGGACCAGATGAGCCTTCTGCAGAGT
GCTTGGATGGAAATTTTGATCCTTGGTGTCGTATACCGGTCTCTTTCGTTTGAGGATGAACTTGTCTATG
CAGACGATTATATAATGGACGAAGACCAGTCCAAATTAGCAGGCCTTCTTGATCTAAATAATGCTATCCT
GCAGCTGGTAAAGAAATACAAGAGCATGAAGCTGGAAAAAGAAGAATTTGTCACCCTCAAAGCTATAGCT
CTTGCTAATTCAGACTCCATGCACATAGAAGATGTTGAAGCCGTTCAGAAGCTTCAGGATGTCTTACATG
AAGCGCTGCAGGATTATGAAGCTGGCCAGCACATGGAAGACCCTCGTCGAGCTGGCAAGATGCTGATGAC
ACTGCCACTCCTGAGGCAGACCTCTACCAAGGCCGTGCAGCATTTCTACAACATCAAACTAGAAGGCAAA
GTCCCAATGCACAAACTTTTTTTGGAAATGTTGGAGGCCAAGGTCTGA

Translation (435 aa):
MSNKDRHIDSSCSSFIKTEPSSPASLTDSVNHHSPGGSSDASGSYSSTMNGHQNGLDSPPLYPSAPILGG
SGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYS
CPATNECEITKRRRKSCQACRFMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKP
YNKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQS
AWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIA
LANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGK
VPMHKLFLEMLEAKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH