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Report for CCDS15219.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15219.1 Public Mus musculus 1 Serpinb2 23 108 98 CCDS HistoryNCBI Gene:18788Re-query CCDS DB by CCDS ID:15219.1Re-query CCDS DB by GeneID:18788See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15219.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009356.10 ENSMUSP00000009356.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009356.10Link to Ensembl Protein Viewer:ENSMUSP00000009356.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000009356Re-query CCDS DB by Protein ID:ENSMUSP00000009356
Original member Current member EBI ENSMUST00000064916.8 ENSMUSP00000065277.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064916.8Link to Ensembl Protein Viewer:ENSMUSP00000065277.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000064916Re-query CCDS DB by Protein ID:ENSMUSP00000065277
Original member Current member NCBI NM_001174170.1 NP_001167641.1 Accepted alive Link to Nucleotide Sequence:NM_001174170.1Link to Protein Sequence:NP_001167641.1Re-query CCDS DB by Nucleotide ID:NM_001174170Re-query CCDS DB by Protein ID:NP_001167641Link to BLAST:NP_001167641.1
Original member Current member NCBI NM_011111.4 NP_035241.1 Accepted alive Link to Nucleotide Sequence:NM_011111.4Link to Protein Sequence:NP_035241.1Re-query CCDS DB by Nucleotide ID:NM_011111Re-query CCDS DB by Protein ID:NP_035241Link to BLAST:NP_035241.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001167641.1 415 P12388 415 100% 0 0
NP_035241.1 415 P12388 415 100% 0 0

Chromosomal Locations for CCDS 15219.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 107515473 107515640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107519652 107519771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107522147 107522275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107522692 107522809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107523065 107523207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107523797 107523961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107524537 107524941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGGAAGAACTTTCCATGGCAAACACCATGTTTGCCCTCAATCTCCTTAAGCAGATAGAAAAATCAAACT
CT
ACCCAGAACATCTTTATCTCTCCATGGAGCATCTCATCAACATTGGCCATAGTTCTCCTCGGTGCTGG
G
GGTAACACTGAACAGCAGATGGCCAAAGTGCTGCAGTTTAATGAAATTGGCAGTTATGGTATCACCACA
AGA
AACCCAGAGAACTTCAGTGGCTGTGATTTCGCACAACAGATACAGAAGGAAAATTATCCTAGTGCTA
TT
TTACAGGCACAAGCAGGAGATAAAATCCATTCAGCCTTCTCCTCTCTCAGCTCAACAATCAACACACC
A
CAGGGGGATTATTTGTTAGAAAGTGCAAACAAGCTGTTTGGAGAGAAGTCTGCAAGATTCAAAGAAGAA
TAC
ATCCAACTCTCTAAGAAATATTACTCAACAGAACCAGAAGCAGTGGACTTCCTTGAATGTGCTGAAG
AA
GCTAGGGAAAAGATTAATTCTTGGGTCAAGACTCAAACCAAAGGTGAAATCCCAAACCTGCTACCCGA
A
GGTTCTGTAGATGAAGACACCAAGATGGTGCTGGTGAATGCTGTCTACTTCAAAGGAAAGTGGAAAACT
CCA
TTTGAGAAGAAACTTAATGGGCTTTATCCTTTCCGTGTGAACTCGCATGAGAGCATACCTGTCCAGA
TG
ATGTTCCTCCATGCAAAGCTGAACATTGGATACATAAAGGACCTGAAGACTCAGATCCTAGAACTTCC
G
CATACTGGAAACATCAGCATGCTCCTGTTGCTTCCCGATGAGATTGAGGACGCATCCACTGGCTTGGAA
TTG
CTGGAAAGTGAAATAAACTTTGCCAACTTCAACAAGTGGATCAGCAAAGACACACTGGATGAAGATG
AT
GTTGTGGTCTACATTCCCAAGTTCAAACTGGCACAAAGCTACGAACTCAAGTCCATTCTTCAAAGCAT
G
GGCATGGAGGATGCCTTCAACAAGGGCAAGGCCAACTTCTCAGGAATGTCTGAGAGGAATGACCTTTTT
CTT
TCTGAGGTGTTCCATCAAGCCAGCGTGGATGTCACCGAGGAGGGCACTGTGGCAGCTGGTGGGACTG
GG
GCAGTTATGACAGGAAGAACTGGCCATGGTGGCCCACAGTTTGTGGCCGATCATCCCTTTCTTTTCTT
T
ATCATGGACAAAATTACCCACACGATACTATTTGTTGGTAGATTCTCCTCACCCTAA


Translation (415 aa):
MEELSMANTMFALNLLKQIEKSNSTQNIFISPWSISSTLAIVLLGAGGNTEQQMAKVLQFNEIGSYGITT
R
NPENFSGCDFAQQIQKENYPSAILQ
AQAGDKIHSAFSSLSSTINTPQGDYLLESANKLFGEKSARFKEE
Y
IQLSKKYYSTEPEAVDFLECAEEAREKINSWVKTQTK
GEIPNLLPEGSVDEDTKMVLVNAVYFKGKWKT
P
FEKKLNGLYPFRVNS
HESIPVQMMFLHAKLNIGYIKDLKTQILELPHTGNISMLLLLPDEIEDASTGLE
L
LESEINFANFNKWISKDTLDEDDVVVYIPKFKLAQSYELKSILQSMGMEDAFNKGKANFSGMSERNDLF
L
SEVFHQASVDVTEEGTVAAGGTGAVMTGRTGHGGPQFVADHPFLFFIMDKITHTILFVGRFSSP




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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