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Report for CCDS16074.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16074.2 Public Mus musculus 2 Csrnp3 23 108 98 CCDS HistoryNCBI Gene:77771Re-query CCDS DB by CCDS ID:16074.2Re-query CCDS DB by GeneID:77771See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 16074.2
The coding region has been updated to extend the N-terminus. The use of an alternative upstream start codon would result in a protein that is 12 aa longer.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 16074.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053910.9 ENSMUSP00000055719.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053910.9Link to Ensembl Protein Viewer:ENSMUSP00000055719.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000053910Re-query CCDS DB by Protein ID:ENSMUSP00000055719
Original member Current member EBI ENSMUST00000122912.7 ENSMUSP00000117533.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122912.7Link to Ensembl Protein Viewer:ENSMUSP00000117533.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122912Re-query CCDS DB by Protein ID:ENSMUSP00000117533
Original member Current member NCBI NM_153409.5 NP_700458.3 Accepted alive Link to Nucleotide Sequence:NM_153409.5Link to Protein Sequence:NP_700458.3Re-query CCDS DB by Nucleotide ID:NM_153409Re-query CCDS DB by Protein ID:NP_700458Link to BLAST:NP_700458.3
Original member Current member NCBI NM_178634.2 NP_848749.2 Accepted alive Link to Nucleotide Sequence:NM_178634.2Link to Protein Sequence:NP_848749.2Re-query CCDS DB by Nucleotide ID:NM_178634Re-query CCDS DB by Protein ID:NP_848749Link to BLAST:NP_848749.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_700458.3 597 P59055-1 597 100% 0 0
NP_848749.2 597 P59055-1 597 100% 0 0

Chromosomal Locations for CCDS 16074.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 65878040 65878052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65948959 65949129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66002303 66002562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66019440 66019736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66021971 66023023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1794 nt):
ATGAGATCTCAAGGTACATGTGACAACGCCGCAGCTATGAGTGGAATTTTAAAGAGGAAGTTCGAAGATG
TGGACGCCTCCTCACCATGCTCCTCTGCTCGGGAATCGGATGATGAAGTCTCCAGCAGCGAAAGTGCTGA
CAGCGGGGATAGCGTCAATCCATCCACCTCAAATCACTTCACCCCTTCCTCCATCCTGAAAAGGGAGAAA
CGGCTGAGGACGAAGAATGTACACTTCAGCTGTGTCACCGTGTACTACTTCACCAGGAGGCAGGGCTTCA
CTAGTGTGCCCAGCCAGGGTGGCAGCACTCTGGGGATGTCCAGTCGTCACAACAGCGTGCGCCAGTACAC
CCTGGGCGAGTTTGCGCGAGAGCAGGAGCGCCTGCACCGGGAGATGCTGAGAGAACACCTCCGGGAGGAG
AAACTCAACTCTCTCAAACTAAAGATGACTAAGAATGGCACTGTAGAGTCTGAGGAAGCTAGCACCCTGA
CCGTGGATGACATTTCCGATGACGATATTGATCTGGACAACACCGAAGTGGACGAATACTTCTTCCTACA
ACCCCTGCCCACAAAAAAGCGGAGAGCTCTGCTGCGCGCCTCGGGGGTGAAGAAGATCGACGTTGACGAG
AAGCACGAACTGCGGGCCATCCGCCTTTCTCGGGAGGACTGTGGCTGTGACTGCAGAGTGTTCTGTGATC
CAGAAACCTGTACCTGCAGCCTGGCAGGCATTAAGTGTCAGGTGGATCGTATGTCTTTCCCATGTGGCTG
CACTAAAGAAGGCTGTAGTAACACAGCAGGTAGAATTGAATTCAATCCTATCCGTGTCCGGACTCATTTT
TTGCACACAATAATGAAACTTGAACTGGAGAAGAACCGAGAGCAACAAACCCCCACGCTGAATGGCTGCC
ACGGGGAGATAAGCGCCCATGGTCCTTCCATGGGCCCTGTCGCTCACTCTGTAGAATATTCCATCGCAGA
CAATTTCGAGATTGAAACCGAACCCCAGGCTGCTGTGCTGCACCTACAGGAGGAACTGGACTGCCAAGGA
GATGAGGAGGAAGAGGAGGAGGACGGAAGCAGTTTCTGCAGTGGAGCCACTGATTCTAGCACCCAAAGCC
TGGCTCCCAGTGAATCGGATGAGGAAGAGGAGGAGGAGGAAGAAGAAGAGGAAGAGGAGGAGGAAGATGA
CGACGACGACAAGGGAGATGGCTTTGTAGAAGGGCTCGGAGCCCATACGGAGGTCGTCCCCCTTCCGTCT
GTCCTTTGTTACTCTGATGGCACCGCAGTTCATGAAAGCCACACAAAAAATGCTTCATTTTACGCTAGCT
CTTCAACTCTCTACTACCAAATAGATAGTCACATCCCAGGAACTCCTAGCCAGCTCTCTGACAACTATTC
TGAAAGAGATACTGTCAAAAACGGTGCCCTTTCGCTGGTGCCTTACGCCATGACCCCAGAGAGGTTTGTT
GACTACGCCAGGCAAGCAGAAGAGGCCTATGGAGCCTCCCACTACCCAGCTGCCAATCCGTCTGTCATCG
TTTGCTGCCCCACCTCTGAAAACGATAGTGGGGTGCCCTGTAACCCCTTGTATCCTGAACACAGGTCCAA
TCTTCCCCAAGTGGAGTTTCACTCATACTTGAAAGGCCCTGCCCAGGAAGGGTTTGTTTCCACATTGAAT
GGCGACAGCCACATTTCAGAGCATCCTGCAGAAAATCCTTTGAGCCTTGCAGAAAAGAGCAGATTGCATG
AAGAGTGCATTCAGTCCCCCGTGGTGGAAACGGTCCCCGTTTAG

Translation (597 aa):
MRSQGTCDNAAAMSGILKRKFEDVDASSPCSSARESDDEVSSSESADSGDSVNPSTSNHFTPSSILKREK
RLRTKNVHFSCVTVYYFTRRQGFTSVPSQGGSTLGMSSRHNSVRQYTLGEFAREQERLHREMLREHLREE
KLNSLKLKMTKNGTVESEEASTLTVDDISDDDIDLDNTEVDEYFFLQPLPTKKRRALLRASGVKKIDVDE
KHELRAIRLSREDCGCDCRVFCDPETCTCSLAGIKCQVDRMSFPCGCTKEGCSNTAGRIEFNPIRVRTHF
LHTIMKLELEKNREQQTPTLNGCHGEISAHGPSMGPVAHSVEYSIADNFEIETEPQAAVLHLQEELDCQG
DEEEEEEDGSSFCSGATDSSTQSLAPSESDEEEEEEEEEEEEEEEDDDDDKGDGFVEGLGAHTEVVPLPS
VLCYSDGTAVHESHTKNASFYASSSTLYYQIDSHIPGTPSQLSDNYSERDTVKNGALSLVPYAMTPERFV
DYARQAEEAYGASHYPAANPSVIVCCPTSENDSGVPCNPLYPEHRSNLPQVEFHSYLKGPAQEGFVSTLN
GDSHISEHPAENPLSLAEKSRLHEECIQSPVVETVPV


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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