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Report for CCDS16133.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16133.1 Public Mus musculus 2 Chn1 23 108 98 CCDS HistoryNCBI Gene:108699Re-query CCDS DB by CCDS ID:16133.1Re-query CCDS DB by GeneID:108699See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16133.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102677.10 ENSMUSP00000099738.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102677.10Link to Ensembl Protein Viewer:ENSMUSP00000099738.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102677Re-query CCDS DB by Protein ID:ENSMUSP00000099738
Original member Current member NCBI NM_175752.3 NP_786928.2 Accepted alive Link to Nucleotide Sequence:NM_175752.3Link to Protein Sequence:NP_786928.2Re-query CCDS DB by Nucleotide ID:NM_175752Re-query CCDS DB by Protein ID:NP_786928Link to BLAST:NP_786928.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_786928.2 334 Q91V57-2 334 100% 0 0

Chromosomal Locations for CCDS 16133.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 73613025 73613196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73614662 73614767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73617921 73618058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73624115 73624192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73624877 73625050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73631746 73631830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73659680 73659931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGCCATCCAAAGAGTCTTGGTCGGGGAGGAAAGCTAACAGAGCCACAGTCCACAAAGCAAAACCCGAGG
GCCGGCAGCAAGGCTTACTGATAGCAGCCTTGGGAATGAAACTGGGCTCTCAAAAGTCATCTGTGACAAT
CTGGCAACCTCTGAAACTCTTTGCTTATTCGCAGTTGACATCACTTGTTAGAAGAGCAACTCTGAAAGAA
AATGAACAAATTCCAAAATATGAAAAGGTTCACAATTTCAAGGTGCATACGTTCCGAGGGCCACACTGGT
GTGAATACTGTGCCAACTTCATGTGGGGCCTCATTGCTCAGGGAGTGAAATGTGCAGATTGTGGGTTGAA
TGTTCACAAGCAGTGTTCCAAGATGGTCCCCAATGACTGTAAGCCAGATCTGAAGCACGTGAAGAAGGTG
TACAGCTGTGACCTGACAACGCTCGTGAAAGCTCACATCACCAAGCGGCCAATGGTGGTAGACATGTGCA
TCAGGGAGATCGAGTCCAGAGGTCTTAATTCTGAAGGACTCTACCGAGTGTCAGGATTTAGTGACCTGAT
TGAAGATGTCAAGATGGCTTTTGATAGAGATGGTGAGAAGGCGGATATTTCTGTGAACATGTATGAGGAC
ATCAACATTATCACTGGTGCACTTAAACTGTACTTCAGGGATCTGCCAATTCCTCTCATCACATACGATG
CCTACCCCAAGTTCATTGAGTCTGCCAAAATTATGGACCCTGACGAGCAATTGGAGACCCTTCACGAAGC
ACTGAGATCGCTGCCGCCTGCCCACTGCGAGACGCTCCGGTACCTCATGGCGCATCTCAAGAGAGTGACC
CTTCATGAGAAGGAGAATCTGATGAGTGCAGAGAACCTTGGGATCGTGTTTGGACCAACCCTCATGAGAT
CCCCAGAGCTCGACCCCATGGCCGCCCTGAACGACATACGCTATCAGAGACTGGTGGTGGAGCTGCTTAT
CAAAAACGAAGACATTTTATTTTAG

Translation (334 aa):
MPSKESWSGRKANRATVHKAKPEGRQQGLLIAALGMKLGSQKSSVTIWQPLKLFAYSQLTSLVRRATLKE
NEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKHVKKV
YSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYED
INIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALRSLPPAHCETLRYLMAHLKRVT
LHEKENLMSAENLGIVFGPTLMRSPELDPMAALNDIRYQRLVVELLIKNEDILF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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