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Report for CCDS17875.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17875.1 Public Mus musculus 3 Pdlim5 23 108 98 CCDS HistoryNCBI Gene:56376Re-query CCDS DB by CCDS ID:17875.1Re-query CCDS DB by GeneID:56376See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17875.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029941.15 ENSMUSP00000029941.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029941.15Link to Ensembl Protein Viewer:ENSMUSP00000029941.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000029941Re-query CCDS DB by Protein ID:ENSMUSP00000029941
Original member NCBI NM_019808.3 NP_062782.2 Updated not alive Link to Nucleotide Sequence:NM_019808.3Link to Protein Sequence:NP_062782.2Re-query CCDS DB by Nucleotide ID:NM_019808Re-query CCDS DB by Protein ID:NP_062782
Current member NCBI NM_019808.4 NP_062782.2 Accepted alive Link to Nucleotide Sequence:NM_019808.4Link to Protein Sequence:NP_062782.2Re-query CCDS DB by Nucleotide ID:NM_019808Re-query CCDS DB by Protein ID:NP_062782Link to BLAST:NP_062782.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062782.2 591 Q8CI51-1 591 100% 0 0

Chromosomal Locations for CCDS 17875.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 142242680 142242769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142244896 142245011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142247295 142247415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142249330 142249510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142259130 142259292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142277817 142278001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142303943 142303979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142304297 142304469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142312123 142312541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142314406 142314448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142352734 142352885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142391713 142391808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1776 nt):
ATGAGCAACTACAGTGTGTCATTGGTCGGCCCAGCTCCTTGGGGTTTCCGGCTCCAAGGTGGCAAGGATT
TCAACATGCCTCTGACAATCTCTAGTCTGAAGGATGGTGGCAAGGCATCTCAGGCACATGTCAGAATAGG
GGACGTGGTTCTCAGCATCGATGGGATCAGTGCACAGGGAATGACGCATCTTGAAGCCCAGAACAAGATT
AAGGCTTGTACGGGCTCCTTGAATATGACTCTACAAAGAGCTTCAGCTGCAGCCAAGAGTGAGCCGGTTT
CCGTCCAGAAGGGTGAACCTAAGGAAGTAGTTAAGCCTGTGCCCATTACATCTCCTGCTGTATCCAAAGT
CACTTCCACTACCAACATGGCCTACAATAAAGCACCACGGCCCTTTGGTTCTGTGTCTTCACCAAAAGTC
ACATCCATCCCATCACCATCGTCTGCGTTCACCCCAGCCCATGCCGCCACTTCATCACATGCTTCCCCCA
CACCTGTGGCCGCTGCCACTCCCCTCCACCTCTCTGCATCCGGACTGCATGTTAGTGCCAATCTTAGTGC
TGACCAGTGTTCATCTCCACCGAACACTGGTAAACCTGCAGTTAATGTCCCACGGCAGCCCACAGTCACC
AGCGTGTGTTCCGAGTCTGCTCAGGAGCTAGCAGAGGGACAGAGAAGAGGATCCCAGGGTGACATTAAGC
AGCAAAATGGCCCACCAAGAAAACACATTGTGGAGCGCAACACGGAGTTTTATCACATACCCACTCACAG
TGATGCCAGCAAGAAACGGCTGATTGAGGACACTGAGGACTGGCGCCCCCGGACTGGAACGACTCAGTCT
CGTTCTTTCCGGATCCTTGCCCAGATCACTGGGACTGAGCATCTGACAGAATCTGAAAATGACAATACGA
AGAAGGCAAATAGCACCCAGGAGCCTTCTCAGCAACCGGCGTCATCTGGAGCTTCACCTCTGAGCGCGTC
TGAGGGCCCCGAGAGCCCAGGTTCCAGCAGGCCCTCGGTGGCTGGCCTCCGCTCCGCTGCTGCTTTCAAG
CCTGTAGGATCCACCAGCGTCAAGTCACCTAGCTGGCAGCGTCCAAACCAAGCAGCACCTTCTACTGGGA
GAATTTCAAACAATGCACGTTCTTCAGGTACAGGGGCGTCTGTGGGGCCTCCCCAGCCAAGTGACCAAGA
CACACTTGTGCAGAGAGCGGAACACATTCCAGCGGGCAAGCGGACCCCCATGTGTGCCCACTGCAACCAA
GTTATCAGGGGACCTTTTCTTGTGGCTCTGGGGAAGTCCTGGCATCCAGAAGAATTTAACTGTGCTCATT
GCAAAAACACAATGGCCTACATAGGCTTTGTAGAGGAGAAGGGAGCACTGTACTGTGAGCTATGCTATGA
GAAGTTCTTTGCTCCTGAATGTGGCCGGTGCCAAAGGAAGATCCTTGGAGAAGTCATCAATGCTTTGAAG
CAGACCTGGCATGTGTCCTGTTTTGTGTGTGTGGCCTGTGGAAAACCCATTCGTAATAATGTTTTCCACT
TGGAAGATGGCGAGCCCTACTGTGAGACAGACTACTACGCCCTTTTTGGAACAATATGTCGTGGATGTGA
ATTCCCCATAGAGGCTGGTGACATGTTCCTGGAAGCTCTGGGATACACTTGGCATGATACTTGCTTTGTG
TGCTCTGTGTGTTGTGAAAGTTTGGAAGGGCAGACATTTTTCTCCAAGAAGGACAAGCCACTTTGCAAAA
AACATGCTCATTCTGTGAATTTTTGA

Translation (591 aa):
MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKI
KACTGSLNMTLQRASAAAKSEPVSVQKGEPKEVVKPVPITSPAVSKVTSTTNMAYNKAPRPFGSVSSPKV
TSIPSPSSAFTPAHAATSSHASPTPVAAATPLHLSASGLHVSANLSADQCSSPPNTGKPAVNVPRQPTVT
SVCSESAQELAEGQRRGSQGDIKQQNGPPRKHIVERNTEFYHIPTHSDASKKRLIEDTEDWRPRTGTTQS
RSFRILAQITGTEHLTESENDNTKKANSTQEPSQQPASSGASPLSASEGPESPGSSRPSVAGLRSAAAFK
PVGSTSVKSPSWQRPNQAAPSTGRISNNARSSGTGASVGPPQPSDQDTLVQRAEHIPAGKRTPMCAHCNQ
VIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFAPECGRCQRKILGEVINALK
QTWHVSCFVCVACGKPIRNNVFHLEDGEPYCETDYYALFGTICRGCEFPIEAGDMFLEALGYTWHDTCFV
CSVCCESLEGQTFFSKKDKPLCKKHAHSVNF


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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