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Report for CCDS18806.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18806.1 Public Mus musculus 4 Htr1d 23 108 98 CCDS HistoryNCBI Gene:15552Re-query CCDS DB by CCDS ID:18806.1Re-query CCDS DB by GeneID:15552See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18806.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088677.4 ENSMUSP00000086052.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088677.4Link to Ensembl Protein Viewer:ENSMUSP00000086052.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000088677Re-query CCDS DB by Protein ID:ENSMUSP00000086052
Original member Current member EBI ENSMUST00000121571.7 ENSMUSP00000112402.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121571.7Link to Ensembl Protein Viewer:ENSMUSP00000112402.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121571Re-query CCDS DB by Protein ID:ENSMUSP00000112402
Original member Current member EBI ENSMUST00000117699.1 ENSMUSP00000112840.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117699.1Link to Ensembl Protein Viewer:ENSMUSP00000112840.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117699Re-query CCDS DB by Protein ID:ENSMUSP00000112840
Original member Current member NCBI NM_001285482.1 NP_001272411.1 Accepted alive Link to Nucleotide Sequence:NM_001285482.1Link to Protein Sequence:NP_001272411.1Re-query CCDS DB by Nucleotide ID:NM_001285482Re-query CCDS DB by Protein ID:NP_001272411Link to BLAST:NP_001272411.1
Original member Current member NCBI NM_001285483.1 NP_001272412.1 Accepted alive Link to Nucleotide Sequence:NM_001285483.1Link to Protein Sequence:NP_001272412.1Re-query CCDS DB by Nucleotide ID:NM_001285483Re-query CCDS DB by Protein ID:NP_001272412Link to BLAST:NP_001272412.1
Original member NCBI NM_001285484.1 NP_001272413.1 Updated not alive Link to Nucleotide Sequence:NM_001285484.1Link to Protein Sequence:NP_001272413.1Re-query CCDS DB by Nucleotide ID:NM_001285484Re-query CCDS DB by Protein ID:NP_001272413
Current member NCBI NM_001285484.2 NP_001272413.1 Accepted alive Link to Nucleotide Sequence:NM_001285484.2Link to Protein Sequence:NP_001272413.1Re-query CCDS DB by Nucleotide ID:NM_001285484Re-query CCDS DB by Protein ID:NP_001272413Link to BLAST:NP_001272413.1
Original member Current member NCBI NM_008309.5 NP_032335.2 Accepted alive Link to Nucleotide Sequence:NM_008309.5Link to Protein Sequence:NP_032335.2Re-query CCDS DB by Nucleotide ID:NM_008309Re-query CCDS DB by Protein ID:NP_032335Link to BLAST:NP_032335.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272411.1 374 Q61224 374 100% 0 0
NP_001272412.1 374 Q61224 374 100% 0 0
NP_001272413.1 374 Q61224 374 100% 0 0
NP_032335.2 374 Q61224 374 100% 0 0

Chromosomal Locations for CCDS 18806.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 136442462 136443586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGTCTCCTCCAAACCAGTCCCTAGAAGGCCTTCCTCAGGAGGCCTCCAACAGATCCCTGAATGTGACAG
GGGCTTGGGACCCAGAGGTCCTGCAGGCTCTCAGAATCTCGCTCGTGGTGGTGCTGTCCGTCATCACACT
GGCCACTGTCCTCTCCAATGCCTTCGTCCTTACCACCATTCTACTCACCAAGAAGCTCCACACCCCAGCC
AATTATCTCATTGGCTCCTTGGCCACCACGGACCTCCTGGTTTCTATCTTGGTCATGCCCATCAGCATAG
CCTACACCACCACCCGCACCTGGAACTTTGGCCAGATCCTGTGTGACATCTGGGTGTCTTCTGACATCAC
GTGCTGCACGGCCTCCATCTTGCATCTCTGTGTCATTGCTCTGGACAGATACTGGGCCATCACCGATGCC
CTGGAGTACAGCAAGCGTCGAACCGCAGGCCACGCAGCAGCCATGATTGCGGCCGTCTGGATCATCTCTA
TTTGTATCTCCATCCCTCCACTCTTCTGGCGGCAGGCCACGGCTCACGAGGAGATGTCCGACTGCCTGGT
GAACACATCTCAGATTTCTTACACCATCTACTCGACCTGTGGCGCCTTCTATATCCCATCCATCTTGCTC
ATTATCCTGTATGGCCGCATATACGTGGCCGCCCGGAGTCGAATCCTGAACCCACCCTCCCTCTACGGGA
AGCGCTTCACCACGGCACAGCTTATCACAGGCTCTGCTGGCTCTTCGCTCTGCTCGCTCAACCCCAGCCT
CCATGAGAGCCACACACACACAGTTGGCTCCCCTCTCTTTTTCAACCAGGTGAAAATCAAGCTTGCTGAT
AGCATCCTAGAACGCAAGAGGATCTCTGCAGCCCGAGAAAGGAAAGCCACTAAGACCCTGGGCATCATTC
TGGGGGCCTTTATCATCTGCTGGTTGCCTTTCTTTGTAGTATCATTGGTCCTCCCCATCTGCAGGGACTC
TTGTTGGATCCACCCGGCCCTCTTTGACTTCTTCACGTGGCTAGGTTATTTAAACTCTCTCATTAACCCC
GTCATCTACACTGTGTTCAACGAAGACTTTCGACAAGCGTTTCAGAAAGTCGTCCATTTCCGGAAGATCT
CATAG

Translation (374 aa):
MSPPNQSLEGLPQEASNRSLNVTGAWDPEVLQALRISLVVVLSVITLATVLSNAFVLTTILLTKKLHTPA
NYLIGSLATTDLLVSILVMPISIAYTTTRTWNFGQILCDIWVSSDITCCTASILHLCVIALDRYWAITDA
LEYSKRRTAGHAAAMIAAVWIISICISIPPLFWRQATAHEEMSDCLVNTSQISYTIYSTCGAFYIPSILL
IILYGRIYVAARSRILNPPSLYGKRFTTAQLITGSAGSSLCSLNPSLHESHTHTVGSPLFFNQVKIKLAD
SILERKRISAARERKATKTLGIILGAFIICWLPFFVVSLVLPICRDSCWIHPALFDFFTWLGYLNSLINP
VIYTVFNEDFRQAFQKVVHFRKIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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