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Report for CCDS20555.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20555.1 Public Mus musculus 6 Kcna1 23 108 98 CCDS HistoryNCBI Gene:16485Re-query CCDS DB by CCDS ID:20555.1Re-query CCDS DB by GeneID:16485See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20555.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055168.4 ENSMUSP00000055225.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055168.4Link to Ensembl Protein Viewer:ENSMUSP00000055225.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000055168Re-query CCDS DB by Protein ID:ENSMUSP00000055225
Original member Current member EBI ENSMUST00000203094.1 ENSMUSP00000144947.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203094.1Link to Ensembl Protein Viewer:ENSMUSP00000144947.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203094Re-query CCDS DB by Protein ID:ENSMUSP00000144947
Original member Current member NCBI NM_010595.3 NP_034725.3 Accepted alive Link to Nucleotide Sequence:NM_010595.3Link to Protein Sequence:NP_034725.3Re-query CCDS DB by Nucleotide ID:NM_010595Re-query CCDS DB by Protein ID:NP_034725Link to BLAST:NP_034725.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034725.3 495 P16388 495 100% 0 0

Chromosomal Locations for CCDS 20555.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 126641868 126643355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1488 nt):
ATGACGGTGATGTCGGGGGAGAATGCGGACGAGGCTTCGACCGCTCCAGGTCACCCCCAGGATGGCAGCT
AC
CCGAGGCAGGCGGACCACGACGACCACGAATGCTGCGAGCGCGTAGTAATCAACATCTCCGGGCTGCG
C
TTCGAAACGCAGCTCAAGACTCTGGCACAGTTCCCCAACACGCTGCTGGGCAACCCGAAGAAACGCATG
CGC
TACTTTGACCCCCTGAGGAACGAGTACTTCTTTGACCGCAACCGGCCCAGCTTCGATGCCATCCTTT
AT
TACTACCAGTCCGGGGGCCGCCTGCGCAGGCCGGTCAACGTGCCCCTGGACATGTTCTCCGAGGAGAT
T
AAATTTTACGAGTTGGGCGAGGAAGCCATGGAGAAGTTCCGGGAAGATGAGGGCTTCATCAAGGAAGAG
GAG
CGCCCCCTACCCGAGAAGGAGTACCAGCGCCAGGTGTGGCTGCTCTTTGAGTATCCGGAGAGCTCAG
GA
CCTGCCCGGGTTATTGCCATTGTGTCGGTCATGGTCATCCTCATCTCCATAGTCATCTTTTGCCTGGA
G
ACTCTCCCTGAGCTGAAGGACGACAAGGACTTCACGGGCACCATCCACCGCATCGACAACACCACAGTC
ATC
TATACTTCCAACATCTTCACAGACCCTTTCTTCATTGTGGAAACCTTGTGTATCATCTGGTTCTCTT
TT
GAGCTGGTGGTGCGCTTCTTCGCCTGCCCCAGCAAGACAGACTTCTTTAAGAACATCATGAACTTCAT
C
GACATTGTGGCCATCATCCCTTATTTCATTACCCTGGGCACGGAGATAGCTGAGCAGGAGGGAAATCAG
AAG
GGCGAGCAGGCCACTTCCCTGGCCATCCTCAGGGTCATCCGCTTGGTAAGGGTGTTCAGAATCTTCA
AA
CTCTCCCGCCACTCCAAGGGCCTTCAGATCCTGGGCCAGACCCTCAAAGCTAGTATGAGGGAGTTAGG
G
CTGCTCATCTTTTTCCTCTTCATTGGGGTCATACTGTTTTCTAGCGCAGTGTACTTTGCGGAGGCGGAA
GAA
GCTGAGTCGCACTTCTCCAGTATCCCCGATGCTTTCTGGTGGGCGGTGGTGTCCATGACCACTGTGG
GA
TACGGTGACATGTACCCTGTGACAATTGGAGGCAAGATCGTGGGCTCCTTGTGTGCCATCGCTGGTGT
G
CTGACAATTGCCCTGCCCGTACCTGTCATTGTGTCCAATTTCAACTATTTCTACCACCGAGAAACTGAG
GGG
GAAGAGCAGGCTCAGTTGCTCCATGTTAGTTCTCCTAACTTAGCCTCTGACAGTGACCTCAGCCGCC
GC
AGCTCCTCTACTATCAGCAAGTCTGAGTACATGGAGATCGAAGAGGATATGAACAATAGCATAGCCCA
T
TACAGACAGGCTAATATCAGAACTGGTAACTGCACCACAGCTGATCAAAACTGCGTTAATAAGAGCAAG
CTC
CTGACCGATGTTTAA


Translation (495 aa):
MTVMSGENADEASTAPGHPQDGSYPRQADHDDHECCERVVINISGLRFETQLKTLAQFPNTLLGNPKKRM
R
YFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKEE
E
RPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFTGTIHRIDNTTV
I
YTSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQ
K
GEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAE
E
AESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETE
G
EEQAQLLHVSSPNLASDSDLSRRSSSTISKSEYMEIEEDMNNSIAHYRQANIRTGNCTTADQNCVNKSK
L
LTDV




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 Genome Browser Links:   Ensembl Genome Browser
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