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Report for CCDS24423.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24423.1 Public Mus musculus 11 Tbrg4 23 108 98 CCDS HistoryNCBI Gene:21379Re-query CCDS DB by CCDS ID:24423.1Re-query CCDS DB by GeneID:21379See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 24423.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000394.13 ENSMUSP00000000394.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000394.13Link to Ensembl Protein Viewer:ENSMUSP00000000394.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000000394Re-query CCDS DB by Protein ID:ENSMUSP00000000394
Original member Current member EBI ENSMUST00000156969.7 ENSMUSP00000114256.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000156969.7Link to Ensembl Protein Viewer:ENSMUSP00000114256.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000156969Re-query CCDS DB by Protein ID:ENSMUSP00000114256
Original member Current member EBI ENSMUST00000189268.6 ENSMUSP00000140835.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189268.6Link to Ensembl Protein Viewer:ENSMUSP00000140835.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189268Re-query CCDS DB by Protein ID:ENSMUSP00000140835
Original member Current member NCBI NM_001130457.2 NP_001123929.1 Accepted alive Link to Nucleotide Sequence:NM_001130457.2Link to Protein Sequence:NP_001123929.1Re-query CCDS DB by Nucleotide ID:NM_001130457Re-query CCDS DB by Protein ID:NP_001123929Link to BLAST:NP_001123929.1
Original member Current member NCBI NM_001362713.1 NP_001349642.1 Accepted alive Link to Nucleotide Sequence:NM_001362713.1Link to Protein Sequence:NP_001349642.1Re-query CCDS DB by Nucleotide ID:NM_001362713Re-query CCDS DB by Protein ID:NP_001349642Link to BLAST:NP_001349642.1
Original member Current member NCBI NM_001362714.1 NP_001349643.1 Accepted alive Link to Nucleotide Sequence:NM_001362714.1Link to Protein Sequence:NP_001349643.1Re-query CCDS DB by Nucleotide ID:NM_001362714Re-query CCDS DB by Protein ID:NP_001349643Link to BLAST:NP_001349643.1
Original member Current member NCBI NM_134011.3 NP_598772.1 Accepted alive Link to Nucleotide Sequence:NM_134011.3Link to Protein Sequence:NP_598772.1Re-query CCDS DB by Nucleotide ID:NM_134011Re-query CCDS DB by Protein ID:NP_598772Link to BLAST:NP_598772.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123929.1 630 Q91YM4-1 630 100% 0 0
NP_001349642.1 630 Q91YM4-1 630 100% 0 0
NP_001349643.1 630 Q91YM4-1 630 100% 0 0
NP_598772.1 630 Q91YM4-1 630 100% 0 0

Chromosomal Locations for CCDS 24423.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 6616613 6616714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6617308 6617422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6617518 6617629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6617963 6618208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6618460 6618604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6618997 6619110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6619556 6619713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6619972 6620143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6620742 6621065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6623816 6624220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1893 nt):
ATGGCCGTTCGCCTGATGAAGCGGTGTACCTGCCTGCTTCGAGAGGCTACCCGCCTAGTTCCTACTGTTG
CCCCAGTTGGCCGACTGAGACTTGCTGGAGTGTCCTGCAAGACTTTGACGTCCTCTGTCAGTTCCCCCTC
CTCGGGCTCCTTGGCGGAGCTGTTGGGGAAAGAGCAGGTGTTTACTCCGTACCCAGAGCACCAAGAGCTG
GACTTCCTCATTGAGAAAGCCTCCAGACCAGAGCAGCTGCTGGAGCTGCTGGGTTCTGACCATAGCCTGC
ACCACAATCACGCGGCCCTCATCCTCATCCGCCTGTCCTACCTGCTGTCTGAGAAGCCAAAGGAAAAGGC
CTTGCTTGCAGAGGATGCTCGCTTTCAGCGACTTGTCAAGCTAGTTGATAGTCAGATAACTTGTGTCTGG
CATGGGACCCTCGTGAAGCTGCTGCGGAGCCTGTACACACTAGTGCTCCCTCAGATCTCCAAGGAGCTGC
AGTCAGTGGAGCAGGAAGTGCGCTGGCGTCTGCGGAGGCTCAAGTACAAGCACTTGGTCTTCCTGGCTGA
GTCCTGTGCCTCCTTCATGAAGGAGCAACACTCGCAGGAACTGCTGGCCGAGCTGCTAATGCACCTGGAG
AGGCGCTGGACAGAGATCAACGACAGCCGTACATTGGTGACCATGATGACAATGGCAGGGCACCTCTCAG
AGTCACTCATGAACCACCTGGAAGACAAGTGCCTGGAGCTGGTGGAGCAGTTTGGCCCTGATGAGCTGCG
GAAGGTGCTAGTGACGCTGGCAGCACAGAGCCGGCGGTCGGTGCCCTTGCTGCGGGCCATCTCCTACCAC
CTGGTACAGAAGCCCTTCCCGATGACAAAAGGCATGCTCCTGGACCTGGCCTACGCCTATGGGAAGCTCA
GTTTCCACCAAACCCAAGTGTCCCAGCGCCTGGCTGCTGACCTCCTGCCCTTCATTCCCAGCATGACGCC
TGGAGAGGTGGCCCGCTGCGCCAAGTCCTTTGCCTTCCTCAAGTGGCTCAACCTGCCTTTGTTTGAAGCC
TTTACTCAGCACCTCCTCAGCAGAGTGCAGGATGTCTCCCTGTCCCATGTGTGCAGCGTTCTTCTTGCCT
TTGCCCGACTGAACTTTCATCCTGAACAAGAAGAGGATCAGTTCTTCAGCATGGTGCATGAGAAGCTGGA
CCCCGTGCTGGGGAGCCTGGAGCCGGCCCTGCAGGTGGACCTGGTGTGGGCGCTGTGCGTGCTGCAGCAC
GTGCACGAGACAGAGCTGCACACGGTTCTCCATCCTGGACTCCACGCTCGGTTTCTAGAGAGCAAGTCTC
CAAAGGACCAGAGTACCTTCCAGAAATTGGTCCACATCAACACCACCGCCCTGCTGGAGCACCCTGAATA
TAAAGGCCCTTTCCTGCCAGCCTCAGCTGTAGCCCCCATCCCCTCACCCTCTAATAAAAAGATGACACCC
CTACAGAAGGAGCTGCAGGAGACACTGAAGGCACTGCTGGGGAACACTGACAAGGGCAGCCTGGAGGTGG
CCACACAGTATGGCTGGGTGCTGGATGCAGAGGTGCTCCTGGATGCCGACGGCCACTTCCTGCCCCTAAG
AAACTTCGTTGCTCCCCACCTTGCCCAGCCAGTGGGGAACCAGCCATTGCCCCCAGGAGCTAAAAGGATC
GCTTTCCTGCGCTGGGAGTTCCCCAACTTCAACAGCAGAAGCAAGGACTTGTTGGGCCGTTTTGTCCTGG
CCCGTCGACATGTGCTGGCTGCAGGCTTCCTGGTAGTAGATGTCCCATATTATGAATGGCTGGATCTGAA
GTCTGAATGGCAGAAAAGCGCCTACCTCAAGGACAAGATGCGAAAAGCAATGGCTGAGGAGCTAGCCAAA
TGA

Translation (630 aa):
MAVRLMKRCTCLLREATRLVPTVAPVGRLRLAGVSCKTLTSSVSSPSSGSLAELLGKEQVFTPYPEHQEL
DFLIEKASRPEQLLELLGSDHSLHHNHAALILIRLSYLLSEKPKEKALLAEDARFQRLVKLVDSQITCVW
HGTLVKLLRSLYTLVLPQISKELQSVEQEVRWRLRRLKYKHLVFLAESCASFMKEQHSQELLAELLMHLE
RRWTEINDSRTLVTMMTMAGHLSESLMNHLEDKCLELVEQFGPDELRKVLVTLAAQSRRSVPLLRAISYH
LVQKPFPMTKGMLLDLAYAYGKLSFHQTQVSQRLAADLLPFIPSMTPGEVARCAKSFAFLKWLNLPLFEA
FTQHLLSRVQDVSLSHVCSVLLAFARLNFHPEQEEDQFFSMVHEKLDPVLGSLEPALQVDLVWALCVLQH
VHETELHTVLHPGLHARFLESKSPKDQSTFQKLVHINTTALLEHPEYKGPFLPASAVAPIPSPSNKKMTP
LQKELQETLKALLGNTDKGSLEVATQYGWVLDAEVLLDADGHFLPLRNFVAPHLAQPVGNQPLPPGAKRI
AFLRWEFPNFNSRSKDLLGRFVLARRHVLAAGFLVVDVPYYEWLDLKSEWQKSAYLKDKMRKAMAEELAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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