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Report for CCDS25165.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25165.1 Public Mus musculus 11 1700020L24Rik 23 108 98 CCDS HistoryNCBI Gene:66330Re-query CCDS DB by CCDS ID:25165.1Re-query CCDS DB by GeneID:66330See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25165.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037378.5 ENSMUSP00000042098.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037378.5Link to Ensembl Protein Viewer:ENSMUSP00000042098.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000037378Re-query CCDS DB by Protein ID:ENSMUSP00000042098
Original member Current member NCBI NM_025492.3 NP_079768.2 Accepted alive Link to Nucleotide Sequence:NM_025492.3Link to Protein Sequence:NP_079768.2Re-query CCDS DB by Nucleotide ID:NM_025492Re-query CCDS DB by Protein ID:NP_079768Link to BLAST:NP_079768.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079768.2 189 Q8C1R3 189 100% 0 0

Chromosomal Locations for CCDS 25165.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 83437745 83437757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83440287 83440596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83440676 83440922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (570 nt):
ATGGATAAACATGGCGTGAAGACTCCTTTGTGGAGGAAGGAGGTGGAGGATCCCGAGGCCAGGGAGGAGG
ATCTGGAGGACGATTCATCGTCGTCCTCGTCTTCGTCGTCGGTGGAAGAGAGGTCAGACCCCGAGAGCGC
GACCGAGACGGAGGAGGACTCCCGAGACGCGGAAGAGCGCGAGGCCCGCTCTGTGTCCTACAGTCCGCTG
CGCCAGGAGTCCAGCAGCCAGCAGGTGGCGCTGCTGCGACGCTCAGACAGCAGCTTCTGGGGTTGGCTTA
GCCCGTTCGCTCTGCTGGGTGGCCTGGCGGCCCCGGCAGACAGGAAGCGGGGTGCCCCGGAGGAACCGTG
CGTGTTGGAGACGCGGCGGCGGCCACCGCGCCGGGGTGGCTGTGCGCGCTGTGAGATTCTTTTCTGCAAG
AAATGCAAGACTCTGCACAGCCACCCGGCCTACGTGGAGCACTGTATTCTTGAGCACCCTGACCTGGGTA
AGGCAGAGGCCACCGGCAACTCTGAGCTCATTGACTCCCAGCCTCCGAGCCCGCAATGCTCCAAACTCTT
CTATCTCTAG

Translation (189 aa):
MDKHGVKTPLWRKEVEDPEAREEDLEDDSSSSSSSSSVEERSDPESATETEEDSRDAEEREARSVSYSPL
RQESSSQQVALLRRSDSSFWGWLSPFALLGGLAAPADRKRGAPEEPCVLETRRRPPRRGGCARCEILFCK
KCKTLHSHPAYVEHCILEHPDLGKAEATGNSELIDSQPPSPQCSKLFYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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