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Report for CCDS26072.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26072.1 Public Mus musculus 12 Tmed8 23 108 98 CCDS HistoryNCBI Gene:382620Re-query CCDS DB by CCDS ID:26072.1Re-query CCDS DB by GeneID:382620See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26072.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037418.6 ENSMUSP00000043742.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037418.6Link to Ensembl Protein Viewer:ENSMUSP00000043742.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000037418Re-query CCDS DB by Protein ID:ENSMUSP00000043742
Original member Current member NCBI NM_001033475.3 NP_001028647.1 Accepted alive Link to Nucleotide Sequence:NM_001033475.3Link to Protein Sequence:NP_001028647.1Re-query CCDS DB by Nucleotide ID:NM_001033475Re-query CCDS DB by Protein ID:NP_001028647Link to BLAST:NP_001028647.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028647.1 326 Q3UHI4 326 100% 0 0

Chromosomal Locations for CCDS 26072.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 87172414 87172631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87174048 87174353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87174541 87174667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87176634 87176763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87181389 87181470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87200086 87200203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGTCGGACCGGCAGGCAGCTGAGGGGCCGGCCTTCTGGAGCCCCGCAGCTCGCCGAGGGTCGGCGGGCG
GCGTCGGGGACCGACGGGGAGTGGAGGAGAGCCAGGCGGCCGCCTCAGAGAAGGAAGATCTGGAAAGCAC
CAACGTCAGCTCTCCACTGGCTTCTGCTTCTGATCCAGCAGCCGAGTCCTCACCATACAGGCCACAGATG
GTATCTCCAGCGAGTAAGGATACCACGGAAGATCTACAGAACGTGGCTGGTGCCTCAGAGGGTCAGGCTC
CGGGGGAGCAGGCGGCGCTGCCAGCAGGCCAGACCCAGGTTCTCAGTGAGATGGCCAAGTACCAAGCTCC
ACAGCGACCTGAGGACACAGTTATGATCCAGTCTGAGCACACTGGGGCTATAGATGTTCTTTCAGCGGAC
TTGGAATCTGCAGATCTTCTGGGGGACCACAGGAAAGTCTCTCCGCCTCTGATGGCTCCTCCGTGCGTCT
GGACCTTTGCCAAAGTGAAGGAGTTCAAAAGCAAGCTGGGCAAGGAGAAGAACAGCCGTCTGGTAGTGAA
GCGGGGAGAAGTGGTCACCATCCGGGTCCCTACCCACCCCGAGGGAAAGCGCGTGTGCTGGGAATTTGCA
ACTGATGACTATGATATTGGTTTTGGAGTTTATTTTGACTGGACCCCAGTAACCAGCACTGATATAACCG
TGCAGGTCAGTGACTCCAGTGAGGATGAGGAGGAGGAAGAGGATGAAGAGGAGGAGATTGAAGAACCCGT
CCCGGTGGGAGATGTAGAGAGAGGCTCCAGGAGTTCTCTACGGGGCCGCTATGGGGAGGTCATGCCTGTG
TACCGGCGGGACAGCCACCGAGATGTGCAAGCTGGCAGCCATGATTACCCTGGGGAGGGCATCTACTTGC
TCAAGTTTGATAACTCCTACTCCTTGCTCCGCAACAAGACTCTCTACTTCCATATCTACTATACTAGCTG
A

Translation (326 aa):
MSDRQAAEGPAFWSPAARRGSAGGVGDRRGVEESQAAASEKEDLESTNVSSPLASASDPAAESSPYRPQM
VSPASKDTTEDLQNVAGASEGQAPGEQAALPAGQTQVLSEMAKYQAPQRPEDTVMIQSEHTGAIDVLSAD
LESADLLGDHRKVSPPLMAPPCVWTFAKVKEFKSKLGKEKNSRLVVKRGEVVTIRVPTHPEGKRVCWEFA
TDDYDIGFGVYFDWTPVTSTDITVQVSDSSEDEEEEEDEEEEIEEPVPVGDVERGSRSSLRGRYGEVMPV
YRRDSHRDVQAGSHDYPGEGIYLLKFDNSYSLLRNKTLYFHIYYTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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