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Report for CCDS28222.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28222.1 Public Mus musculus 16 Senp7 23 108 98 CCDS HistoryNCBI Gene:66315Re-query CCDS DB by CCDS ID:28222.1Re-query CCDS DB by GeneID:66315See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28222.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089362.8 ENSMUSP00000086779.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089362.8Link to Ensembl Protein Viewer:ENSMUSP00000086779.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000089362Re-query CCDS DB by Protein ID:ENSMUSP00000086779
Original member Current member NCBI NM_025483.4 NP_079759.2 Accepted alive Link to Nucleotide Sequence:NM_025483.4Link to Protein Sequence:NP_079759.2Re-query CCDS DB by Nucleotide ID:NM_025483Re-query CCDS DB by Protein ID:NP_079759Link to BLAST:NP_079759.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079759.2 1037 Q8BUH8 1037 100% 0 0

Chromosomal Locations for CCDS 28222.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 56075539 56075578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56082356 56082408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56089384 56089464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56097340 56097431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56111606 56111803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56123779 56123970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56138985 56139100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56151274 56151458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56153375 56153708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56155224 56155375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56158468 56158614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56162375 56162408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56165833 56166012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56169695 56169957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56171750 56171883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56173157 56173273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56175797 56175919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56178957 56179049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56179498 56179622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56180526 56180578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56184147 56184190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56184761 56184829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56186059 56186209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56188235 56188372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3114 nt):
ATGGACAGGGCCAGGCCTGGGCGTCGGCGAGCTTCATCAGAGATTGTTACAGAGGGAAAACGGAAAAAGT
CATCACCAGCTGATTTACAGAAGATAACAAAGTTGTTAACTGTAAAGTCAGAGGATGTTCTTGCTCAGTC
ACCATTGTCCAAACTCAGAGGCTCAGAATGCTGGTGGACAAGAAGCCTAAGAAATAAAGTCATCTGTCTA
GACCACAAAAAACCAAAAGCTGCCCGTGGGTGTCCTCCTAAGGGATTACCAAAAAGGCATCTCAGAGTTA
TGTTGACGAATGTTCTATGGACGGACTTAGGACGAGAATTCAGAAAGACCCTGCCTAGAAAGGATGCTAA
TTTATGTGCTCCCAGCAAGGTGCAATCAGACTCATTGCCTTCGACATCTGTTGACAGCATAGAGACATGT
CAAAGATTAGATCCTCTTCACCAAAGCCTTAATTTATCCGAAAGGACACCCAGAGTTATACTGACGGATA
TCCGGCAAACAGAATTAGGAAGAAAATATTTAAAGATCCCACCTGTAACTGAGGCCAGTTTGAGTGATAC
AGCCAACCTGAAATCAGAGCAACTTTCTTCATCATCTGATGGCAGCTTAGAGTCTTGTCAGAGTGTAAAT
CATCACAAGAGCTTTTTATCTGAAAGTGGTCCCAAACCAAGTAGGACAGGTGACGTTCCTGCAAAGGAGG
CTGCATGTGGGGGACAGAAGCAGGGTGATGATGGAGGAGTCACTCCTGAGATGGCTGCTCCTCATCCTAA
AGACTTTAATACTGGAAATAAAGGTTGTGATTATCTTGAAGAGGGGACCAGCAACAAGAATACTTCATAT
TCTTATTCGGAAATGGACCATACTCCAGTTTCCAGGAAGAGAAAGAAAAGGGGTAGAAGTAATTTTCATG
ATTCTCATAATTCTAAGACTTCTTTGGATAAGCCAACAGAACATACAAAAGAAGAAGAAAATGACTCTTC
AGTCTCCCGTAAGCTTGAAGAGTCCGGTGAAGACTCTCACCAGGACCCAGCACCACCCGAAGGACTCGCG
CCAGAATCTTTAGAGAGCGAGGCCACTAACCTGCGCTCATTCGCTGCTGGTCAGGAGCCAGATGCTAGCG
CTGCCTCTGGAAGGGCCTCTTCACCCAACAAAAGCTTGGAGAGCTCTGCTTCTAGTGAAGTGTCGGAGAA
TTCTTCCGTGGCTGTGAAGGGTGAGGCGTTGACTCTAAAAGAAGCATCCCCTCCGGGTGGAAGCAGTGAA
GAGAGCCAGTTGTTGATCTCAGCTGAGCCAATTGTAGTTTCCAGTGATGAAGAAGGACCGGTTGAACATA
AGAATTCAGTAATTCTAAAATTACAGCCTCCTCATGAGATTATGAGTGAAAATCAGGGCACTTCTGACCC
ACAGTTGTCAGAGCTGACACTCGGTGCATGTGAATCTGTACAGGTAACATCTGAATTATTTCCATACAAT
CCTGATGTAGAAAACATTTCCTGTATTAAATCTAATAGTGAAATGGATCTGAAATTGGATTTCATATTTA
CATGTGTGTATATTGGTAAAATAAAAGGAACTCCAAAAGGTTGTGTCACGTTCACAAAGAAGTATATTAA
AATCCCGTTTCAAGTGTCCACAAATGAGATTTCCCTGACAGTGGACACCGCACGTTTAAAGAGGTTCGGG
TTATGGGAAAGCAAGGATGAGGACCACAGCAAGAGGAGCCACGCTATCCTTTTCCTCTGGCTTTCCTCAG
ACTACCTTCAAGACATTCAGACCCAGCTAGAAAACCCCATGCTAAGCCAGCAATCAAAAGCCAATGAATT
TATTTTCCTTGAGTTAAACAGTTCCATTTCACAAAGAGAAGAATTGAAATTGAAAGATATTATGATGGAA
ATCAGTACAAAAAATGGAAATTTACACCTGTCTTGTCCATTGCCCTGGGTCCAGGCACTTCCTTTGTTTC
AGGATCTCTCTCCACAAGAAATCTCTTTTCTTCACTATTACTATGCTTCAGCTTCTGCTCTCCCCACTGC
TGCTGGGGCAGACATGAAGAAGAAGTCAGTGTCTCAGCCCTCAAATTCAGACACCATCAAGCCTACTTAC
ACCTTCCTACATAAACAAAGTAGTGGTTGCTACTCGCTCTCTATTACTTCAAGTCCAGAGGAGGAATGGC
AGGAAGTCAGGAACACGGGACCCGTTCAGAAGTTGATTGTTTATCCTCCACCACCTACTAAGGGAGGCTT
GGGAGTAACTAATGAAGATCTAGAGTGTTTAGAAGAAGGAGAATTTCTTAACGATGTAATCATTGACTTT
TACCTTAAGTATCTTCTATTGGAGAAGGCATCAGATGAACTTGTTGAACGAAGTCACATTTTTAGTAGCT
TTTTCTATAAATGCTTGACAAGAAAGGAAAATAATTTAACAGAAGATAATCCAGATCTATCAGTGGCTCA
GAGGAGACACCGAAGAGTGAGAACATGGACTCGTCATATAAACATTTTTAATAAAGACTACATCTTTGTA
CCTGTTAATGAATCGTCTCACTGGTATCTTGCAGTCATTTGTTTCCCATGGCTAGAAGAGGCTGTGTATG
AAGATTGTCCACAAACTGTGTCCCAACAGTTCCAGGGTCAGCAGTCTCAGCATGACCACAAAATGACAGA
TAATGATCCACATACCACTTCAACTGTGTCCACGAGTGCAGAGGATTCCCAAAGTACCGAGGTGAATATG
TCAGTACCAAAGAAAATGTGTAAGCGGCCATGTATTCTCATACTAGACTCCCTGAAAGCTGCTTCTATAC
AAAACACAGTTCAGAACTTACGAGAGTATTTGGAGGTAGAGTGGGAGGTGAAACGAAAAACGCACCGTGA
ATTCAGTAAAACCAATATGGTCGACCTGTGCCCCAAAGTCCCTAAGCAGGATAACAGCAGTGACTGTGGA
GTCTATTTGTTGCAGTATGTGGAGAGCTTTTTCCAGGATCCCATTGTTAACTTTGAACTTCCAATTCACT
TGGAGAAATGGTTTCCTCGCCATGTAATAAAGACCAAACGGGAAGATATTCGAGAGCTCATTTTGAAACT
TCACTTACAGCAACAGAAGGGCGGCAGCTGCTAG

Translation (1037 aa):
MDRARPGRRRASSEIVTEGKRKKSSPADLQKITKLLTVKSEDVLAQSPLSKLRGSECWWTRSLRNKVICL
DHKKPKAARGCPPKGLPKRHLRVMLTNVLWTDLGREFRKTLPRKDANLCAPSKVQSDSLPSTSVDSIETC
QRLDPLHQSLNLSERTPRVILTDIRQTELGRKYLKIPPVTEASLSDTANLKSEQLSSSSDGSLESCQSVN
HHKSFLSESGPKPSRTGDVPAKEAACGGQKQGDDGGVTPEMAAPHPKDFNTGNKGCDYLEEGTSNKNTSY
SYSEMDHTPVSRKRKKRGRSNFHDSHNSKTSLDKPTEHTKEEENDSSVSRKLEESGEDSHQDPAPPEGLA
PESLESEATNLRSFAAGQEPDASAASGRASSPNKSLESSASSEVSENSSVAVKGEALTLKEASPPGGSSE
ESQLLISAEPIVVSSDEEGPVEHKNSVILKLQPPHEIMSENQGTSDPQLSELTLGACESVQVTSELFPYN
PDVENISCIKSNSEMDLKLDFIFTCVYIGKIKGTPKGCVTFTKKYIKIPFQVSTNEISLTVDTARLKRFG
LWESKDEDHSKRSHAILFLWLSSDYLQDIQTQLENPMLSQQSKANEFIFLELNSSISQREELKLKDIMME
ISTKNGNLHLSCPLPWVQALPLFQDLSPQEISFLHYYYASASALPTAAGADMKKKSVSQPSNSDTIKPTY
TFLHKQSSGCYSLSITSSPEEEWQEVRNTGPVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDF
YLKYLLLEKASDELVERSHIFSSFFYKCLTRKENNLTEDNPDLSVAQRRHRRVRTWTRHINIFNKDYIFV
PVNESSHWYLAVICFPWLEEAVYEDCPQTVSQQFQGQQSQHDHKMTDNDPHTTSTVSTSAEDSQSTEVNM
SVPKKMCKRPCILILDSLKAASIQNTVQNLREYLEVEWEVKRKTHREFSKTNMVDLCPKVPKQDNSSDCG
VYLLQYVESFFQDPIVNFELPIHLEKWFPRHVIKTKREDIRELILKLHLQQQKGGSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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