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Report for CCDS29146.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29146.1 Public Mus musculus 18 Spata24 23 108 98 CCDS HistoryNCBI Gene:71242Re-query CCDS DB by CCDS ID:29146.1Re-query CCDS DB by GeneID:71242See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29146.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025209.11 ENSMUSP00000025209.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025209.11Link to Ensembl Protein Viewer:ENSMUSP00000025209.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000025209Re-query CCDS DB by Protein ID:ENSMUSP00000025209
Original member Current member NCBI NM_029485.2 NP_083761.1 Accepted alive Link to Nucleotide Sequence:NM_029485.2Link to Protein Sequence:NP_083761.1Re-query CCDS DB by Nucleotide ID:NM_029485Re-query CCDS DB by Protein ID:NP_083761Link to BLAST:NP_083761.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083761.1 205 Q6P926-1 205 100% 0 0

Chromosomal Locations for CCDS 29146.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 35656715 35656844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35656949 35657051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35660283 35660353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35660444 35660574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35660792 35660857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35662012 35662128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGGCGACGCCCCTTGGGTGGTCGCAGGGGGGCTCTGGATCAGTGTGTCTCGCCTTCGATCAACTGCGGG
ACGTGATTGAATCTCAGGAGGAACTTATCCACCAGCTGAGGAATGTGATGGTTCTCCAGGATGAGAATTT
TGTCAGTAAAGAAGAATTCCATGAAATAGAGAAGAAACTGGTGGAGGAGAAAGCTGCTCATGCCAAAACC
AAAGCCCTCCTGGCCAAGGAAGAAGAGAAGTTACAGTTTGCTCTGGGAGAGGTGGAGGTGCTGTCCAAGC
AGCTGGAGAAAGAGAAGATGGCCTTTGAAAAAGCGCTCTCCAGTGTCAAGAGCAGAGTCCTGCAGGAGTC
CAGCAAGAAGGACCAGCTCATCACCAAGTGCAATGAAATTGAATCCCACATTATAAAGCAAGAAGATATA
CTTAATGGCAAAGAGAATGAGATTAAAGAGTTGCAGCAGGTTATCAGCCAGCAGAAACAGAATTTCAGGA
ATCACATATCTGACTTCCGGATCCAAAAGCAGCAGGAGACCTACATGGCCCAGGTGCTGGATCAGAAGCG
TAAGAAAGCCACAGGAATGCGTCGGGCCCGTAGCCGTCAGTGTTCCAGGGAGAAATAA

Translation (205 aa):
MATPLGWSQGGSGSVCLAFDQLRDVIESQEELIHQLRNVMVLQDENFVSKEEFHEIEKKLVEEKAAHAKT
KALLAKEEEKLQFALGEVEVLSKQLEKEKMAFEKALSSVKSRVLQESSKKDQLITKCNEIESHIIKQEDI
LNGKENEIKELQQVISQQKQNFRNHISDFRIQKQQETYMAQVLDQKRKKATGMRRARSRQCSREK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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