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Report for CCDS29518.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29518.1 Public Mus musculus 19 Fermt3 23 108 98 CCDS HistoryNCBI Gene:108101Re-query CCDS DB by CCDS ID:29518.1Re-query CCDS DB by GeneID:108101See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29518.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040772.8 ENSMUSP00000037858.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040772.8Link to Ensembl Protein Viewer:ENSMUSP00000037858.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000040772Re-query CCDS DB by Protein ID:ENSMUSP00000037858
Original member Current member NCBI NM_001362399.1 NP_001349328.1 Accepted alive Link to Nucleotide Sequence:NM_001362399.1Link to Protein Sequence:NP_001349328.1Re-query CCDS DB by Nucleotide ID:NM_001362399Re-query CCDS DB by Protein ID:NP_001349328Link to BLAST:NP_001349328.1
Original member Current member NCBI NM_153795.2 NP_722490.1 Accepted alive Link to Nucleotide Sequence:NM_153795.2Link to Protein Sequence:NP_722490.1Re-query CCDS DB by Nucleotide ID:NM_153795Re-query CCDS DB by Protein ID:NP_722490Link to BLAST:NP_722490.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349328.1 665 Q8K1B8 665 100% 0 0
NP_722490.1 665 Q8K1B8 665 100% 0 0

Chromosomal Locations for CCDS 29518.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 6999341 6999520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6999639 6999780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7001757 7001881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7002213 7002452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7002570 7002676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7002822 7002946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7003031 7003080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7003169 7003303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7003468 7003575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7013848 7013950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7014060 7014228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7014328 7014447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7014617 7014850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7018666 7018825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1998 nt):
ATGGCGGGTATGAAGACAGCCTCCGGGGACTATATCGACTCTTCCTGGGAGCTGAGGGTGTTTGTGGGCG
AGGAGGACCCTGAGGCCCAGTCTGTCACACTCCGAGTCACGGGGGAGTCGCACATTGGTGGGGTACTTCT
GAAGATCGTGGAGGAAATCAATCGCAAGCAGGACTGGTCTGACCATGCCATTTGGTGGGAGCAGAAGAGA
CAGTGGCTGCTGCAGACACACTGGACGCTGGACAAGTACGGGATTCTGGCCGATGCCCGCCTCTTCTTTG
GGCCACAGCACCGACCTGTCATCCTGCGACTGCCCAACAGACGTGTGCTGCGGCTTCGGGCCAGTTTCTC
CAAGCCCCTCTTCCAAACGGTGGCTGCCATCTGCCGCCTCCTCAGTATCAGGCACCCAGAGGAGCTGTCT
CTGCTGCGTGCTCCAGAGAAGAAGGAGAAGAAGAAGAAGGAGAAGGAGCCTGAAGAGGAGGTGCATGACC
TGACAAAGGTTGTCTTAGCTGGCGGTGTGGCACCCACTTTATTCAGAGGCATGCCAGCACACTTCTCGGA
CAGCGCCCAGACTGAGGCTTGTTACCACATGCTGAGCCGGCCACAGCCGGCACCTGACCCTCTCCTGCTC
CAGCGCCTGCCAAGGCCCAGCTCCCTGCCTGACAAGACCCAGCTCCACAGCAGGTGGCTGGATTCATCTC
GGTGCCTCATGCAGCAAGGTATCAAGGCCGGGGATGTGCTTTGGCTGCGATTTAAGTACTACAGCTTTTT
TGACCTGGATCCCAAGACAGACCCTGTGCGGCTGACCCAGCTGTATGAGCAGGCCCGCTGGGACTTACTG
ACAGAGGAGATCGACTGCACTGAAGAAGAGATGATGGTGTTTGCTGCCCTGCAGTACCACATCAACAAAC
TGACCCTGAGCGGGGATGTGGGTGAGCTGGCCTCTGGGGACCTGGGACTGGATGACCTGGATGCAGCCCT
GAACAACCTGGAGGTGAAGCTGAAGGGGTCAGCACCCTCAGACATGCTGGATAGTCTCACTACCATCCCA
GAACTCAAGGACCATCTCCGGATCTTCCGGCCCCGGAAGCTGACCCTGAAGGGCTACCGCCAGTACTGGG
TGGTATTTAAGGACACCACACTGTCCTACTATAAGAGCCAAGATGAAGCACCGGGGGACCCTACCCAGCA
GCTCAACCTCAAGGGCTGTGAGGTGGTCCCTGATGTCAATGTCTCTGGCCAGAAGTTCTGCATCAAACTC
CTGGTACCCTCACCAGAGGGCATGAGTGAGATCTACCTGAGGTGCCAGGATGAACAGCAGTACGCACAGT
GGATGGCTGCCTGCCGACTGGCCTCCAAGGGCCGCACCATGGCGGACAGCAGCTATGCCAGCGAGGTGCA
GGCCATTCTGGCCTTCCTCAGCCTGCAGCGGGCAGGTGGTAGCAATGGAGGCTCAGGGAACAAACCTCAA
GGTCCTGAAGCCCCTGCTGAGGGCCTTAACCCCTATGGCCTCGTGGCTCCTCGGTTCCAGCGAAAGTTCA
AGGCCAAGCAGCTCACCCCAAGGATCCTGGAAGCTCACCAAAACGTGGCCCAACTCTCACTGACCGAGGC
CCAGCTGCGCTTTATCCAGGCCTGGCAATCCTTGCCCGACTTTGGCATCTCCTATGTGATGGTCAGGTTC
AAGGGCAGCAGGAAAGATGAGATCCTAGGCATTGCCAACAACCGACTCATCCGGATTGATCTGGCCGTGG
GTGACGTGGTCAAGACCTGGCGCTTCAGCAACATGCGGCAATGGAACGTCAACTGGGACATACGGCAGGT
GGCCATTGAGTTCGATGAACACATCAATGTGGCCTTCAGCTGTGTGTCTGCTAGCTGCCGCATCGTGCAC
GAGTACATCGGGGGTTACATCTTCCTGTCCACCCGAGAGCGGGCCCGAGGGGAAGAGCTGGATGAGGATC
TGTTCCTGCAGCTTACAGGAGGCCATGAGGCCTTCTGA

Translation (665 aa):
MAGMKTASGDYIDSSWELRVFVGEEDPEAQSVTLRVTGESHIGGVLLKIVEEINRKQDWSDHAIWWEQKR
QWLLQTHWTLDKYGILADARLFFGPQHRPVILRLPNRRVLRLRASFSKPLFQTVAAICRLLSIRHPEELS
LLRAPEKKEKKKKEKEPEEEVHDLTKVVLAGGVAPTLFRGMPAHFSDSAQTEACYHMLSRPQPAPDPLLL
QRLPRPSSLPDKTQLHSRWLDSSRCLMQQGIKAGDVLWLRFKYYSFFDLDPKTDPVRLTQLYEQARWDLL
TEEIDCTEEEMMVFAALQYHINKLTLSGDVGELASGDLGLDDLDAALNNLEVKLKGSAPSDMLDSLTTIP
ELKDHLRIFRPRKLTLKGYRQYWVVFKDTTLSYYKSQDEAPGDPTQQLNLKGCEVVPDVNVSGQKFCIKL
LVPSPEGMSEIYLRCQDEQQYAQWMAACRLASKGRTMADSSYASEVQAILAFLSLQRAGGSNGGSGNKPQ
GPEAPAEGLNPYGLVAPRFQRKFKAKQLTPRILEAHQNVAQLSLTEAQLRFIQAWQSLPDFGISYVMVRF
KGSRKDEILGIANNRLIRIDLAVGDVVKTWRFSNMRQWNVNWDIRQVAIEFDEHINVAFSCVSASCRIVH
EYIGGYIFLSTRERARGEELDEDLFLQLTGGHEAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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