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Report for CCDS35944.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35944.2 Public Mus musculus 10 Dip2a 23 108 98 CCDS HistoryNCBI Gene:64451Re-query CCDS DB by CCDS ID:35944.2Re-query CCDS DB by GeneID:64451See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 35944.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 35944.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036033.13 ENSMUSP00000043710.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036033.13Link to Ensembl Protein Viewer:ENSMUSP00000043710.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000036033Re-query CCDS DB by Protein ID:ENSMUSP00000043710
Original member Current member NCBI NM_001081419.2 NP_001074888.2 Accepted alive Link to Nucleotide Sequence:NM_001081419.2Link to Protein Sequence:NP_001074888.2Re-query CCDS DB by Nucleotide ID:NM_001081419Re-query CCDS DB by Protein ID:NP_001074888Link to BLAST:NP_001074888.2

Chromosomal Locations for CCDS 35944.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 76264621 76264873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76265498 76265621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76266317 76266491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76268492 76268566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76270104 76270161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76270396 76270457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76272533 76272703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76273035 76273203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76274149 76274279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76274989 76275098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76276329 76276440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76276584 76276705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76278488 76278611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76279706 76279786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76279857 76279966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76280676 76280877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76282513 76282627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76285526 76285653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76286362 76286442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76287313 76287449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76291008 76291147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76292312 76292426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76294494 76294613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76296067 76296160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76296353 76296417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76297755 76297857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76298253 76298362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76298670 76298793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76299903 76300013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76302204 76302295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76305016 76305213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76307073 76307192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76313176 76313304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76317867 76318094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76319467 76319586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76321490 76321606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76327702 76327773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76345107 76345197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4689 nt):
ATGGCCGACCGCGGATGCCCTCTGGAGGCGGCGCCGCTGCCCGCCGAGGTGCTCGAGAGCCTGGCGGAGC
TGGAGCTGGAGCTGTCCGAAGGTGACATCACTCAGAAAGGATATGAGAAGAAGAGGGCGAAGCTGCTGGC
TCGGTACATCCCCCTCATTCAAGGAGTAGACCCATGTCTGCAGACAGAGAATAGAATTCCCGGGCCCTTG
CTGACGGCAGCTACCGCTAAACCACAGAAGTCTCGGGCTACCAACTCCAGGGATGAGCGCTTCCGGTCAG
ATGTTCACACGGAAGCCGTGCAAGCAGCTTTGGCCAAGTACAAGGAGAGGAAGATGCCCATGCCTTCAAA
GAGACGCTCCGCCCTTGTGCACTCCTCCGTTGAGACCTACACGCCTCCAGACACGTCATCTGCCTCAGAA
GATGAGGGCTCTTTACGGCGACCTGGGCGACTCACCTCCACTCTGCTCCAGAGCCATTCCGGCATCGAGC
CCTGGCTCGACAGGGTCATTCAGGGCTCCTCCACTTCATCCTCTGCATCCTCCACCTCATCCCACCCGGG
AGGGAGACCTGCTGCTGCTCCCAGTGCCTCCACTGCGCTCGCAGGCCTCACGGCCCACGCCCACATAGAT
CTGCACTCTGCCCCACCGGATGTCACCACTGGGCTTGTGGAGCACTCATCCTACGAGCGTCCCCAGATGG
CCTCTGTGCGAGGCATTCCTCGAGGGCACGGCAGGAACGTGCTGGAGACCGCGGACGGTGTGCCTGTGAA
CAGCAGAGTGTCCTCCAAAATCCAGCAGCTACTGAACACCCTGAAGAGGCCAAAGCGCCCTCCTCTGAAG
GAATTTTTTGTGGATGATTTTGAGGAGTTACTGGAAGTTCAGCAACCAGATCCGAACCAGCCCAAGCCTG
AGGGGGATCAGATGGCCGTACTGAAGGGAGAGCCTCTGTCAGTGGGGACTAATGGGCCACTGTCTCTGTT
GGCTGCACTGCAGCTCTGGGGCACAACACAGCCGAAAGCCCCCTGTCTGACTGCCTTGGACACAGCGGGG
AAAGCCACCTGCACCCTGACCTATGGCAAACTCTGGAGTCGGAGTCTAAAATTAGCGTATACTCTACTTA
ACAAACTGACTAGTAAGAATGAGCCCCTGCTTAACCCTGGAGACAGAGTGGCACTCGTGTTTCCAAACAG
TGACCCTGTCATGTTCATGGTGGCGTTCTACGGGTGTCTCCTGGCGGAGCTGGTCCCTGTCCCTATAGAA
GTACCACTAACGAGAAAGGATGCAGGCAGCCAGCAGGTTGGGTTTCTCCTGGGCAGCTGTGGGGTGACCC
TGGCCCTGACCACAGATGCTTGTCAGAAGGGTCTGCCCAAGGCACCGACAGGCGAGGTGGCCACTTTCAA
AGGTTGGCCCCCCCTCGCCTGGCTGGTGATTGATGGGAAGCATCTGACGAGGCCTCCAAAGGACTGGTAC
CCGCTGGCCCAGGACACAGGGTCCAGGACTGCCTACATTGAATATAAAACCAGCAAAGAAGGCAGCACAG
TAGGGGTCACCGTATCCCACTCATCCCTGCTGGCGCAGTGCCAGGCCCTGACCCAGGCGTGCGGGTACAC
GGAAGCTGAAACGTTAACGAATGTGCTGGACTTCAAAAGGGATGCTGGTTTGTGGCACGGAGTCTTAACA
AGTGTCATGAATAGGATGCATGTCATCACCATCCCATATGCCCTCATGAAGGTCAACCCACTCTCCTGGA
TTCAGAAAGTGTGTTCCTATAAAGCCCGGGCTGCCCTGGTAAAGTCCCGAGATATGCACTGGTCGCTCTT
GGCACAGCGAGGTCAGAGGGATGTCTGTCTCAGCTCTCTGCGCATGTTGATTGTGGCAGACGGCGCTAAC
CCATGGTCAATATCTTCCTGCGATGCCTTCCTCAACGTCTTCCAGTCCAGAGGTCTGAGGCCAGAGGTCA
TCTGTCCTTGTGCCAGTTCTCCTGAGGCGCTGACAGTAGCCATCCGCAGGCCTCCAGATCTGGGAGGACC
TCCTCCAAGAAAAGCTGTCCTGTCAATGAACGGCCTGAGCTACGGTGTGATCCGAGTTGACACTGAGGAG
AAGCTGTCGGTTCTCACTGTTCAGGATGTCGGCCAGGTGATGCCCGGAGCTAGTGTGTGTGTTGTGAAGG
TAGATGGTGCCCCTTATCTCTGTAAAACTGATGAAATTGGAGAAATCTGTGTCAATTCTGTTGCAACTGG
GACAGCATACTATGGACTGCTTGGAATCACGAAGAATACATTTGAGACCGTCCCGGTCACTGCGGACGGA
GTCCCTGTCTCTGACCGGCCTTTCACCAGGACAGGCCTTCTGGGATTTATCGGACCTGATAACCTGGTCT
TCGTCGTGGGCAAGTTGGACGGGCTGATGGTCGTAGGAGTCCGCAGACACAATGCAGATGACATTGTGGC
TACTGCCCTGGCTGTGGAGCCCATGAAGTTTGTCTACAGAGGCAGGATCGCTGTGTTCTCTGTGACTGTG
CTGCACGATGACCGGATTGTCTTGGTGGCTGAGCAGCGGCCTGACGCTTCGGAGGAAGACAGCTTCCAAT
GGATGAGCCGTGTGCTACAGGCCATCGACAGCATCCACCAGGTGGGTGTGTACTGTTTGGCCCTAGTTCC
TGCCAACACTTTGCCCAAGGCTCCTCTGGGAGGAATTCACATTTCTGAAACGAAGCAGCGCTTTCTGGAA
GGGACGCTCCACCCATGTAACGTGTTGATGTGCCCTCACACGTGCGTTACCAACCTTCCCAAGCCTCGCC
AGAAACAGCCAGAAGTTGGACCAGCCTCGATGATTGTTGGGAACCTGGTTGCTGGAAAAAGGATCGCACA
GGCCTCTGGGAGAGAGCTGGCCCACCTGGAGGACAGCGACCAGGCTCGCAAGTTCCTGTTCCTGGCAGAC
GTGCTGCAGTGGCGGGCTCACACCACTCCTGACCACCCTCTGTTCCTGCTGCTGAATGCTAAGGGCACGG
TCACCAGCACTGCAACCTGTATCCAGCTGCACAAAAGGGCTGAGAGAGTGGCTGCCGCTCTGATGGAGAA
GGGGCGGCTAGATGCTGGGGACCATGTGGCTTTGGTGTACCCTCCAGGGGTGGATCTTATTGCTGCATTC
TATGGCTGCCTGTACTGTGGCTGTGTGCCTGTCACTGTGCGACCCCCACACCCCCAGAACCTTGGCACAA
CATTGCCCACTGTGAAGATGATTGTAGAGGTCAGCAAATCTGCGTGTGTCCTCAGCACACAGGCCATCAC
ACGGCTGCTCAAGTCCAAAGAGGCAGCTGCCGCTGTAGATGTCAGGACCTGGCCAACCATCCTAGATACA
GATGACATTCCAAAAAAGAAGGTGGCTAGCATTTTCAGACCGCCCTCCCCAGACGTGCTCGCGTACTTGG
ACTTCAGTGTGTCAACGACAGGGATCTTAGCTGGAGTTAAGATGTCGCACGCAGCCACAAGTGCCTTGTG
CCGTTCCATAAAGCTTCAGTGTGAGCTGTACCCCTCACGGCAGATCGCCATCTGCCTGGACCCTTACTGT
GGCCTCGGGTTTGCACTGTGGTGTCTGTGCAGCGTCTACTCTGGGCACCAGTCAGTGCTCGTTCCCCCAC
TGGAGCTGGAGAGCAACGTGTCCCTCTGGCTGTCTGCCGTCAGCCAGTACAAGGCCCGAGTTACCTTCTG
TTCCTACTCAGTGATGGAAATGTGCACCAAGGGCCTGGGTGCTCAGACAGGCGCCCTTAGGATGAAGGGG
GTGAACCTGTCGTGTGTGCGCACATGCATGGTAGTGGCTGAGGAGCGGCCCCGGATCTCGTTAACACAGT
CATTCTCCAAGCTGTTCAAAGACCTGGGCCTCCCTGCTCGTGCTGTGAGCACCACCTTTGGGTGCAGGGT
CAATGTAGCTATCTGCCTCCAGGGCACAACAGGCCCAGACCCCACGACCGTCTACGTGGACATGCGGGCA
CTGCGCCATGACAGAGTTCGTCTGGTGGAACGGGGTTCTCCGCATAGTCTACCATTGATGGAGTCTGGAA
AGATCCTCCCGGGAGTGAAGGTCATCATTGCTCACACTGAGACCAAAGGGCCCCTCGGAGACTCACACCT
GGGTGAGATCTGGGTGAGCAGTCCCCACAATGCCACTGGGTACTACACAGTCTATGGGGAGGAAACACTT
CATGCTGACCACTTCAGTGCCCGGCTGAGCTTTGGAGACACCCAGACCATTTGGGCAAGGACTGGCTACC
TTGGCTTCCTTCGCAGGACAGAGCTGACAGATGCCAGTGGAGAGCGCCATGATGCACTGTATGTCGTTGG
GTCTCTGGATGAAACGCTAGAACTGAGAGGCATGCGGTATCACCCCATCGACATAGAAACCTCCGTGATC
CGTGCACACAGGAGCATTGCAGAGTGTGCCGTGTTCACCTGGACCAACCTGCTGGTGGTGGTGGTGGAGC
TGGATGGGCTGGAGCAGGACGCCCTGGACCTGGTGGCCCTGGTGACCAACGTCGTGCTGGAGGAGCACTA
CCTTGTGGTGGGCGTGGTGGTCATCGTGGATCCCGGAGTGATCCCCATCAACTCTCGGGGCGAGAAGCAA
CGCATGCACCTGCGAGATGGCTTCCTGGCTGACCAGCTGGACCCCATCTACGTGGCCTACAATATGTGA

Translation (1562 aa):
MADRGCPLEAAPLPAEVLESLAELELELSEGDITQKGYEKKRAKLLARYIPLIQGVDPCLQTENRIPGPL
LTAATAKPQKSRATNSRDERFRSDVHTEAVQAALAKYKERKMPMPSKRRSALVHSSVETYTPPDTSSASE
DEGSLRRPGRLTSTLLQSHSGIEPWLDRVIQGSSTSSSASSTSSHPGGRPAAAPSASTALAGLTAHAHID
LHSAPPDVTTGLVEHSSYERPQMASVRGIPRGHGRNVLETADGVPVNSRVSSKIQQLLNTLKRPKRPPLK
EFFVDDFEELLEVQQPDPNQPKPEGDQMAVLKGEPLSVGTNGPLSLLAALQLWGTTQPKAPCLTALDTAG
KATCTLTYGKLWSRSLKLAYTLLNKLTSKNEPLLNPGDRVALVFPNSDPVMFMVAFYGCLLAELVPVPIE
VPLTRKDAGSQQVGFLLGSCGVTLALTTDACQKGLPKAPTGEVATFKGWPPLAWLVIDGKHLTRPPKDWY
PLAQDTGSRTAYIEYKTSKEGSTVGVTVSHSSLLAQCQALTQACGYTEAETLTNVLDFKRDAGLWHGVLT
SVMNRMHVITIPYALMKVNPLSWIQKVCSYKARAALVKSRDMHWSLLAQRGQRDVCLSSLRMLIVADGAN
PWSISSCDAFLNVFQSRGLRPEVICPCASSPEALTVAIRRPPDLGGPPPRKAVLSMNGLSYGVIRVDTEE
KLSVLTVQDVGQVMPGASVCVVKVDGAPYLCKTDEIGEICVNSVATGTAYYGLLGITKNTFETVPVTADG
VPVSDRPFTRTGLLGFIGPDNLVFVVGKLDGLMVVGVRRHNADDIVATALAVEPMKFVYRGRIAVFSVTV
LHDDRIVLVAEQRPDASEEDSFQWMSRVLQAIDSIHQVGVYCLALVPANTLPKAPLGGIHISETKQRFLE
GTLHPCNVLMCPHTCVTNLPKPRQKQPEVGPASMIVGNLVAGKRIAQASGRELAHLEDSDQARKFLFLAD
VLQWRAHTTPDHPLFLLLNAKGTVTSTATCIQLHKRAERVAAALMEKGRLDAGDHVALVYPPGVDLIAAF
YGCLYCGCVPVTVRPPHPQNLGTTLPTVKMIVEVSKSACVLSTQAITRLLKSKEAAAAVDVRTWPTILDT
DDIPKKKVASIFRPPSPDVLAYLDFSVSTTGILAGVKMSHAATSALCRSIKLQCELYPSRQIAICLDPYC
GLGFALWCLCSVYSGHQSVLVPPLELESNVSLWLSAVSQYKARVTFCSYSVMEMCTKGLGAQTGALRMKG
VNLSCVRTCMVVAEERPRISLTQSFSKLFKDLGLPARAVSTTFGCRVNVAICLQGTTGPDPTTVYVDMRA
LRHDRVRLVERGSPHSLPLMESGKILPGVKVIIAHTETKGPLGDSHLGEIWVSSPHNATGYYTVYGEETL
HADHFSARLSFGDTQTIWARTGYLGFLRRTELTDASGERHDALYVVGSLDETLELRGMRYHPIDIETSVI
RAHRSIAECAVFTWTNLLVVVVELDGLEQDALDLVALVTNVVLEEHYLVVGVVVIVDPGVIPINSRGEKQ
RMHLRDGFLADQLDPIYVAYNM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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