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Report for CCDS37918.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37918.1 Public Mus musculus 19 Zp1 23 108 98 CCDS HistoryNCBI Gene:22786Re-query CCDS DB by CCDS ID:37918.1Re-query CCDS DB by GeneID:22786See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37918.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025641.1 ENSMUSP00000025641.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025641.1Link to Ensembl Protein Viewer:ENSMUSP00000025641.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000025641Re-query CCDS DB by Protein ID:ENSMUSP00000025641
Original member Current member NCBI NM_009580.2 NP_033606.2 Accepted alive Link to Nucleotide Sequence:NM_009580.2Link to Protein Sequence:NP_033606.2Re-query CCDS DB by Nucleotide ID:NM_009580Re-query CCDS DB by Protein ID:NP_033606Link to BLAST:NP_033606.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033606.2 623 Q62005 623 100% 0 0

Chromosomal Locations for CCDS 37918.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10914323 10914453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10914624 10914731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10914829 10914910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10916191 10916335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10916434 10916623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10916718 10916845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10917637 10917734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10917897 10918084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10918469 10918612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10918702 10919065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10919380 10919501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10920404 10920575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1872 nt):
ATGGCCTGGGGTTGTTTTGTGGTCCTGCTTCTGCTGGCGGCAGCTCCCCTGAGATTGGGTCAGCGCCTGC
ATCTCGAGCCTGGCTTTGAATACAGCTATGACTGTGGGGTACGGGGCATGCAGCTGCTGGTGTTCCCTAG
GCCAAACCAGACTGTCCAATTCAAGGTGCTGGATGAATTTGGGAACCGGTTTGAGGTGAATAACTGCTCT
ATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCAGCTGATTACAAAGGCTGCC
ACGTTCTAGAGAAGGATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGT
GGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTG
GCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCT
TGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGC
TCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCC
TGGGAATTGACTGAGCTGGATTCTGTAGGTACCCATCTGCCCCAGGAGCGGTGCCAGGTAGCCTCCGGGC
ACATCCCATGCATGGTAAATGGAAGTTCCAAGGAAACCTGTCAGCAGGCTGGCTGCTGCTATGACAGTAC
CAAAGAAGAGCCCTGTTACTATGGCAACACAGTCACTCTCCAGTGTTTCAAAAGTGGCTACTTTACCTTG
GTCATGTCACAAGAAACAGCCTTGACACATGGAGTCCTGCTAGACAATGTCCACCTGGCCTATGCCCCCA
ACGGATGCCCCCCTACCCAGAAGACAAGTGCTTTTGTGGTCTTCCATGTCCCTCTCACCCTCTGTGGAAC
AGCAATCCAGGTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAG
GGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCGGCTTCATGTTCGCTGCATCTTCAATGCTAGCG
ATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCT
GAGGCTGGAGCTGAGGATTGCCACGGATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTT
GTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTC
TGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTC
AGATGGGTGTCCTTTCAAGGGTGACAACTACAGAACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCC
TTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCC
TTAGGGGACAGGTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTAC
TACGTGTGACTCTGGGATAGCAAGGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTG
GATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAGGTTCCAGCA
GGAACTCCAGCTCAAGAATGCTGCTCCTGCTGCTGGCCATCACCCTAGCCCTGGCGGCCGGGATCTTTGT
GGGTCTGATCTGGGCCTGGGCCCAGAAGCTCTGGGAAGGCATCAGATATTAA

Translation (623 aa):
MAWGCFVVLLLLAAAPLRLGQRLHLEPGFEYSYDCGVRGMQLLVFPRPNQTVQFKVLDEFGNRFEVNNCS
ICYHWVTSEAQEHTVFSADYKGCHVLEKDGRFHLRVFIQAVLPNGRVDIAQDVTLICPKPDHTVTPDPYL
APPTTPEPFTPHAFALHPIPDHTLAGSGHTGLTTLYPEQSFIHPTPAPPSLGPGPAGSTVPHSQWGTLEP
WELTELDSVGTHLPQERCQVASGHIPCMVNGSSKETCQQAGCCYDSTKEEPCYYGNTVTLQCFKSGYFTL
VMSQETALTHGVLLDNVHLAYAPNGCPPTQKTSAFVVFHVPLTLCGTAIQVVGEQLIYENQLVSDIDVQK
GPQGSITRDSAFRLHVRCIFNASDFLPIQASIFSPQPPAPVTQSGPLRLELRIATDKTFSSYYQGSDYPL
VRLLREPVYVEVRLLQRTDPSLVLVLHQCWATPTTSPFEQPQWPILSDGCPFKGDNYRTQVVAADREALP
FWSHYQRFTITTFMLLDSSSQNALRGQVYFFCSASACHPLGSDTCSTTCDSGIARRRRSSGHHNITLRAL
DIVSSPGAVGFEDAAKLEPSGSSRNSSSRMLLLLLAITLALAAGIFVGLIWAWAQKLWEGIRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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