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Report for CCDS38776.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38776.1 Public Mus musculus 4 Rgs3 23 108 98 CCDS HistoryNCBI Gene:50780Re-query CCDS DB by CCDS ID:38776.1Re-query CCDS DB by GeneID:50780See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38776.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107424.1 ENSMUSP00000103047.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107424.1Link to Ensembl Protein Viewer:ENSMUSP00000103047.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107424Re-query CCDS DB by Protein ID:ENSMUSP00000103047
Original member NCBI NM_001081650.2 NP_001075119.1 Updated not alive Link to Nucleotide Sequence:NM_001081650.2Link to Protein Sequence:NP_001075119.1Re-query CCDS DB by Nucleotide ID:NM_001081650Re-query CCDS DB by Protein ID:NP_001075119
Current member NCBI NM_001081650.3 NP_001075119.1 Accepted alive Link to Nucleotide Sequence:NM_001081650.3Link to Protein Sequence:NP_001075119.1Re-query CCDS DB by Nucleotide ID:NM_001081650Re-query CCDS DB by Protein ID:NP_001075119Link to BLAST:NP_001075119.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001075119.1 433 Q9DC04-6 433 100% 0 0

Chromosomal Locations for CCDS 38776.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 62619734 62619787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62623845 62623926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62625097 62625202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62625742 62626093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62626492 62626531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62631124 62631320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62634446 62634529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62640717 62640828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62646684 62646727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62652714 62652836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62657103 62657210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1302 nt):
ATGAACCGCTTCAATGGGCTCTGCAAAGTGTGTTCAGAACGCCGCTACCGGCAGATCACCATCCGGAGGG
GCAAAGACGGCTTTGGCTTCACCATCTGCTGTGACTCTCCGGTCCGAGTCCAGGCTGTGGATTCTGGGGG
CCCGGCAGAGAGGGCGGGACTGCAGCAGCTGGACACAGTGCTACAACTGAATGAGAGACCCGTGGAGCAC
TGGAAATGTGTGGAGCTGGCACATGAGATCCGGAGCTGTCCTAGCGAGATCATCCTGCTCGTGTGGCGTG
TGGTCCCCCAGATCAAGCCGGGGCCAGATGGCGGAGTCTTGCGGCGGGCCTCCTGCAAGTCCACACATGA
CCTCCTGTCACCCCCTAACAAGAGGGAGAAGAACTGTACTCATGGGGCCCCAGTTCGTCCTGAGCAGCGC
CACAGCTGCCACCTGGTGTGTGACAGCTCTGATGGTCTACTGCTTGGTGGCTGGGAGCGCTACACTGAGG
TGGGCAAGCGCAGTGGCCAGCACACCCTGCCTGCACTGTCCCGGACCACCACCCCTACTGACCCCAACTA
CATCATCCTGGCCCCACTGAATCCTGGAAGCCAGTTGCTGCGGCCTGTGTACCAGGAGGATACAATCCCT
GAAGAACCGGGGACTACTACTAAAGGGAAATCGTACACCGGCCTGGGCAAGAAGTCTCGGCTCATGAAGA
CAGTGCAGACCATGAAGGGCCACAGTAACTACCAAGACTGCTCAGCCCTGAGACCGCACATCCCGCATTC
CAGTTACGGCACCTATGTCACCCTGGCCCCTAAAGTCCTGGTGTTCCCTGTCTTTGTGCAGCCCCTAGAT
CTCTGTAACCCTGCCCGGACTCTCCTGCTGTCGGAGGAGCTGCTGCTGTATGAGGGGAGGAACAAGACTT
CCCAGGTGACACTGTTTGCCTACTCGGACCTGCTGCTGTTCACTAAGGAGGAGGAGCCAGGCCGCTGCGA
CGTCCTGAGAAATCCCCTCTACCTCCAGAGCGTGAAGCTACAGGAGGGCTCTTCAGAAGACTTGAAATTC
TGTGTGCTGTACCTGGCAGAGAAGGCAGAGTGCTTATTCACTTTGGAGGCACACTCGCAGGAGCAGAAGA
AGAGAGTGTGCTGGTGCCTGTCGGAGAACATCGCCAAGCAGCAACAGCTGGCCGCACCACCTACAGAGAG
GAAGAAACTTCACCCTTACGGCTCTCTCCAGCAGGAGATGGGGCCAGTCACCTCCATCAGTGCCACCCAG
GATAGAAGCTTTACCTCATCAGGACAGACCCTGATTGGCTGA

Translation (433 aa):
MNRFNGLCKVCSERRYRQITIRRGKDGFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEH
WKCVELAHEIRSCPSEIILLVWRVVPQIKPGPDGGVLRRASCKSTHDLLSPPNKREKNCTHGAPVRPEQR
HSCHLVCDSSDGLLLGGWERYTEVGKRSGQHTLPALSRTTTPTDPNYIILAPLNPGSQLLRPVYQEDTIP
EEPGTTTKGKSYTGLGKKSRLMKTVQTMKGHSNYQDCSALRPHIPHSSYGTYVTLAPKVLVFPVFVQPLD
LCNPARTLLLSEELLLYEGRNKTSQVTLFAYSDLLLFTKEEEPGRCDVLRNPLYLQSVKLQEGSSEDLKF
CVLYLAEKAECLFTLEAHSQEQKKRVCWCLSENIAKQQQLAAPPTERKKLHPYGSLQQEMGPVTSISATQ
DRSFTSSGQTLIG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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