NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38923.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38923.1 Public Mus musculus 4 Luzp1 23 108 98 CCDS HistoryNCBI Gene:269593Re-query CCDS DB by CCDS ID:38923.1Re-query CCDS DB by GeneID:269593See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38923.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001116.4 ENSMUSP00000001116.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001116.4Link to Ensembl Protein Viewer:ENSMUSP00000001116.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000001116Re-query CCDS DB by Protein ID:ENSMUSP00000001116
Original member Current member EBI ENSMUST00000063021.6 ENSMUSP00000060619.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063021.6Link to Ensembl Protein Viewer:ENSMUSP00000060619.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000063021Re-query CCDS DB by Protein ID:ENSMUSP00000060619
Original member Current member EBI ENSMUST00000105849.8 ENSMUSP00000101475.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105849.8Link to Ensembl Protein Viewer:ENSMUSP00000101475.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105849Re-query CCDS DB by Protein ID:ENSMUSP00000101475
Original member Current member EBI ENSMUST00000170102.7 ENSMUSP00000130758.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170102.7Link to Ensembl Protein Viewer:ENSMUSP00000130758.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170102Re-query CCDS DB by Protein ID:ENSMUSP00000130758
Original member Current member NCBI NM_024452.2 NP_077772.2 Accepted alive Link to Nucleotide Sequence:NM_024452.2Link to Protein Sequence:NP_077772.2Re-query CCDS DB by Nucleotide ID:NM_024452Re-query CCDS DB by Protein ID:NP_077772Link to BLAST:NP_077772.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077772.2 1068 Q8R4U7 1068 100% 0 0

Chromosomal Locations for CCDS 38923.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 136540468 136543518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136545238 136545393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3207 nt):
ATGGCAGAACTCACTAACTACAAGGATGCTGCCTCCAACCGCCACCTGCGATTTAAGTTACAGAGCCTGA
GC
CGCCGCCTCGATGAGTTAGAGGAAGCTACAAAAAACCTCCAGAGAGCGGAGGATGAGCTCCTGGACCT
C
CAGGACAAGGTGATCCAGGCAGAGGGCAGCGACTCCAGCACGCTGGCTGAGATCGAGGTGCTGCGCCAG
CGG
GTACTGAAGATTGAAGGTAAAGATGAGGAAATTAAGAGAGCAGAGGATCTATGTCATACGATGAAGG
AG
AAACTTGAAGAGGAAGAAAACCTTACGCGAGAGCTAAAATCTGAAATTGAGCGGCTTCAGAAACGAAT
G
GTTGATTTAGAGAAGCTAGAGGAGGCTTTGAGCAGGAGTAAGAATGAATGTTCCCAGCTTTGTTTGAGC
CTC
AATGAAGAGAGAAATCTGACCAAGAAAATCTCTTCTGAGTTGGAAATGCTCAGAGTCAAAGTGAAAG
AG
CTAGAATCTTCAGAGGACCGCTTAGATAAAACTGAGCAGAGTTTAGTGTCAGAATTAGAAAAGCTAAA
A
TCATTAACCCTGAGCTTTGTAAATGAGAGAAAATACTTGAATGAAAAGGAGAAAGAAAATGAGAAAATA
ATA
AAAGAGCTTACTCAAAAACTGGAGCAGAACAAGAAAATGAACCGAGACCACATGAGAAATGCTTCCA
CT
TTTCTGGAAAGGAATGACCTACGGATAGAGGACGGCATTTCCTCTACACTGTCATCCAAAGAGTCAAA
A
AGGAAGGGCAGTCTAGACTACCTAAAGCAGGTCGAGAATGAAACCAGAGACAAATCAGAAAATGAAAAG
AAC
CGGAATCAGGAAGACAACAAAGTGAAAGACCTTAACCAAGAGATTGAGAAACTTAAGACACAAATCA
AA
CATTTTGAATCTTTGGAAGAGGAGCTTAAGAAAATGAGGGCTAAAAACAATGACCTTCAGGATAATTA
C
CTAACTGAGCTGAATAGAAACAGAAGCTTAGCCAGCCAGCTAGAGGAGATAAAGCTGCAGGTCAGGAAA
CAA
AAAGAGTTAGGAAATGGAGACATAGAAGGTGAAGATGCTTTCCTTTTGGGCAGAGGCAGGCACGAGA
GG
ACTAAGCTCAAAGGCCATGGGAGTGAGGCCTCTGTGTCCAAGCATACATCACGGGAACTGTCTCCCCA
G
CATAAGCGGGAAAGGCTCCGGAACAGGGAGTTTGCTCTCAGTAACGAACACTATTCTCTAAGCAGCAAA
CAG
GCTTCTTCTCCAGTTTTCACAAACAAAAGGGCAGCAAAAGCCTCCAACATGGGAATGGGTACAGACA
GT
GGGACTCAGGAGACAAAGAGAACTGAAGACCGATTTGCACCTGGGTCCTCTCACAGTGAAGGGAAAAG
G
GGTAGGGAGCAGCCATCAGTGCTTAGCCGTTACCCCCCTGCTGCCCAGGAGCACACTAAAGTTTGGAAA
GGA
GCTCCCAAGCCAGGCACTGAGAGTGGACTTAAGGGAAAAGTAGAGAAGACAACACGAACATTTAGTG
AT
TCCACTCATGTATCTGTGCCCAATGATATAGTGGGGAAAGGTGATAAGACTTCTGACCTCTCCTCTGA
G
GCACACTGTGGGAAGAGAGGACAGGTGCCTGGCCATGCAAGTCAGGGAACACAGGCTGTAGAGTCTAGC
TGC
TCTAAGGCCATCGGAGCTCTCTCCTCATCTCAAAAAGCCTCCTCAGAAGGACTTTCTAAGGGTAAAA
AG
ACTGCCAATGGCCTAGCGGCTGATGCCAATTTTTCAAATTCTAAAGCTCCAATTTTATCAAAATATCC
T
TATAGTTCAAGAAGCCAAGAAAATATACTTCAGGGCTTTTCATTGCCAAATAAAGAAGGAGTTGATCAG
CCT
GTAGCAGTTGTGATGGAAGACAGCAGTCAGCATGAAGCCCTGAGGTGCCGTGTCATCAAATCCAGTG
GC
AGAGAGAAGCCAGACTCAGATGATGACCTGGACATAGAGTCTTTTGTTACTGCCAAGTTGGTGAACAC
A
ACTATCACTCCAGAGCCAGAGCCCAAACCACAGCCAAACTCAAGAGAAAAGGTTAAGTCCAGAGGGGGA
ACT
AGAACTGCCCTATTTGAAAATGATAAAAATGCTGCAATAGAAAATGACTCTGTGAAACCTACCAGGC
CT
TCCTCCAATGCTATAGAATTCCCAGATGCCAACTGTGCTGGGGTGAAAAATCAAAGGCCCTTCAGCCC
T
AGAGAGGCCCTGCGGTCTAGAGCAATTATAAAACCCGTTATCATTGATAAGGATGTGAAAAAAATCATG
GGT
GGATCTGGAACTGAGGTTGTATTGGAGAAGCAGAAATCCACCTCTAAATCTGTGACAAGCAAAGTGA
CA
AGCAGCATTACCATCTACCCCTCTGACAGCAGTGGGCCTAGAGCCGTCCCGAGCGAGGCCCCAAGGGA
G
AGGCATACATCCACCAGCAACATCCAGGTGGGGCCCCCAGAGCTCACAGCAATTAGCAACCATGTCAGC
TCC
CCTCTTGAGCTCTCTATTCATAAACATGACATCACCTTGCAGCTCACAGAAGCTGAAAGAGTGGGAG
AT
GGGTCTCCAAAGAATAGAGCAGAGATGGTGGTCTCTAGGAGTAGCATTCTAATCAAGCCATCAGAGTC
T
GTGGAGAAGAATAGTCATGTGCCCCCAGCCGAGACAATCAGGTGGAAAAGCCATAGTGCCTCTTCAGAC
AGC
AGACACATCACAGTGCGGAATGCCTGGAAGAGTAAGAGAGACTTGAAATGTTCAGAAGACCCCCCGA
CT
GGAATAGGTAGGAACATGGAAGCTACTAACGCCTATACGCAGAGGCCCTGCACAGACTTCTTAGAACT
T
GAGCAGCCCAGGTCACAGCCATCTGAACAGGGCGCTCGAAGAGTAGGAAATTCAGGGGATGCTCCTGAG
CTC
TCCCCGAGGAGGACCCAAAGTAGCCTCACCGCATCAGAGGTGCTCACCCGCAGGGACCGGATGGGAG
GT
GCCATCACTGCTGCCTCCTGCAACCACTCATCAAGCATGGAGGAAGGGGAGGACAGCACATTTGTTAC
C
AGCAGGCGAATACACAACCCGCTGGAGCATTCTGAACTGCCTGGAAAGCAGGGACTGCCAGAGCCTGAG
CCA
GTTTGGACTGAGGAGCGGCTGCACCCAGCAAAGCCTTATGCTGAGGAAGACTGA


Translation (1068 aa):
MAELTNYKDAASNRHLRFKLQSLSRRLDELEEATKNLQRAEDELLDLQDKVIQAEGSDSSTLAEIEVLRQ
R
VLKIEGKDEEIKRAEDLCHTMKEKLEEEENLTRELKSEIERLQKRMVDLEKLEEALSRSKNECSQLCLS
L
NEERNLTKKISSELEMLRVKVKELESSEDRLDKTEQSLVSELEKLKSLTLSFVNERKYLNEKEKENEKI
I
KELTQKLEQNKKMNRDHMRNASTFLERNDLRIEDGISSTLSSKESKRKGSLDYLKQVENETRDKSENEK
N
RNQEDNKVKDLNQEIEKLKTQIKHFESLEEELKKMRAKNNDLQDNYLTELNRNRSLASQLEEIKLQVRK
Q
KELGNGDIEGEDAFLLGRGRHERTKLKGHGSEASVSKHTSRELSPQHKRERLRNREFALSNEHYSLSSK
Q
ASSPVFTNKRAAKASNMGMGTDSGTQETKRTEDRFAPGSSHSEGKRGREQPSVLSRYPPAAQEHTKVWK
G
APKPGTESGLKGKVEKTTRTFSDSTHVSVPNDIVGKGDKTSDLSSEAHCGKRGQVPGHASQGTQAVESS
C
SKAIGALSSSQKASSEGLSKGKKTANGLAADANFSNSKAPILSKYPYSSRSQENILQGFSLPNKEGVDQ
P
VAVVMEDSSQHEALRCRVIKSSGREKPDSDDDLDIESFVTAKLVNTTITPEPEPKPQPNSREKVKSRGG
T
RTALFENDKNAAIENDSVKPTRPSSNAIEFPDANCAGVKNQRPFSPREALRSRAIIKPVIIDKDVKKIM
G
GSGTEVVLEKQKSTSKSVTSKVTSSITIYPSDSSGPRAVPSEAPRERHTSTSNIQVGPPELTAISNHVS
S
PLELSIHKHDITLQLTEAERVGDGSPKNRAEMVVSRSSILIKPSESVEKNSHVPPAETIRWKSHSASSD
S
RHITVRNAWKSKRDLKCSEDPPTGIGRNMEATNAYTQRPCTDFLELEQPRSQPSEQGARRVGNSGDAPE
L
SPRRTQSSLTASEVLTRRDRMGGAITAASCNHSSSM
EEGEDSTFVTSRRIHNPLEHSELPGKQGLPEPE
P
VWTEERLHPAKPYAEED




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser