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Report for CCDS39644.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39644.1 Public Mus musculus 6 Rad51ap1 23 108 98 CCDS HistoryNCBI Gene:19362Re-query CCDS DB by CCDS ID:39644.1Re-query CCDS DB by GeneID:19362See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39644.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112221.7 ENSMUSP00000107841.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112221.7Link to Ensembl Protein Viewer:ENSMUSP00000107841.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112221Re-query CCDS DB by Protein ID:ENSMUSP00000107841
Original member Current member NCBI NM_009013.4 NP_033039.2 Accepted alive Link to Nucleotide Sequence:NM_009013.4Link to Protein Sequence:NP_033039.2Re-query CCDS DB by Nucleotide ID:NM_009013Re-query CCDS DB by Protein ID:NP_033039Link to BLAST:NP_033039.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033039.2 337 Q8C551 337 99.4065% 0 2

Chromosomal Locations for CCDS 39644.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 126924195 126924340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126924918 126925067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126926359 126926517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126927538 126927690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126928141 126928227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126929993 126930102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126934714 126934849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126935953 126936008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126939494 126939510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGGTGCGTCCTATCAGAAATAGAAAACCAATAAATTATTCACAGTTTGAAGATTCTGGCAATGACTCTG
ATGATGATTTTATTTCTTCATCCACACCTGTAAACAAGTCAAAAACTGTGCCAAAGGTATTAAAGCAAGA
CAAACCAAAACCTAACTTGAAGAATCTCCAAAAAGAAGAGGTCTTACCAACAGAACCCCCTAAAAAAAGG
GTGGCTTTAGATGACAAGGTCTTCCAAAGAGGTCTAGAAGTTGCCCTGGCTTTATCTGTGAAGGAACTTC
CAACACTCACCAACCAAGTAAAGAAGTCCAAAGAGAAAAGCACTGACAAACAAGGCAAAGAGAAAACAGA
AAATACGGGTAAACCTCCTCATGTCTCTAACTGCAGTGTAGCCAGTGATGATGTAGAAGATTTGGACAAG
ATCACAGAGGAGGGGGACGCCTCGAGTGTTGAAGGGGAGAGGAAGTCACCATCTCAAGCCAAGGCTCCGC
GGAGGAGAGCACCTTCTGAAGGCAGCGATGGCAGCAGTGCTAACGACACGGAGTCGGAGAGCGCCACTGG
TGAAGGTTCAGAAAGTGATCCTGATTTTGATGAGAGTAAAGAAAGTGATGAAGACTTTGGTGTGAGAAGA
AGTAAAGAATCAAAGAAGAAAACAGTGCAGAAGAAACCTGCAGGGGAAAAGAAGGAAAGGAAATCAAAAC
CCAAATGTGAGGCATCAGTGACTTCAGTAGACCCAGCTCCAGCTGCCATCAAGTCAGGATCTCCATCTTT
ACCCCAGGCAGTTGGTCTTCCTTCTGAGGCCACTAGGAAACCAGCAATAATGTGCAGCCCTTCAGCTGAA
AGCAAGAGGCCCAAGTGGGTCCCCCCAGCTGCCTCTGGGAGCAGGAACTCTAGCAGCAATGCATTGGCAG
GAACACCTGCCAAGTCCCCGAGTCAGAGCCTGCGTCTGGGCCTCTCCCGATTAGCGCCAGTTAAGCGCTT
GCATCCAAGTGCCACAAGCAGCCAAGTGCGGTAG

Translation (337 aa):
MVRPIRNRKPINYSQFEDSGNDSDDDFISSSTPVNKSKTVPKVLKQDKPKPNLKNLQKEEVLPTEPPKKR
VALDDKVFQRGLEVALALSVKELPTLTNQVKKSKEKSTDKQGKEKTENTGKPPHVSNCSVASDDVEDLDK
ITEEGDASSVEGERKSPSQAKAPRRRAPSEGSDGSSANDTESESATGEGSESDPDFDESKESDEDFGVRR
SKESKKKTVQKKPAGEKKERKSKPKCEASVTSVDPAPAAIKSGSPSLPQAVGLPSEATRKPAIMCSPSAE
SKRPKWVPPAASGSRNSSSNALAGTPAKSPSQSLRLGLSRLAPVKRLHPSATSSQVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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