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Report for CCDS40384.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40384.1 Public Mus musculus 8 Gtpbp3 23 108 98 CCDS HistoryNCBI Gene:70359Re-query CCDS DB by CCDS ID:40384.1Re-query CCDS DB by GeneID:70359See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40384.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000007754.12 ENSMUSP00000007754.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000007754.12Link to Ensembl Protein Viewer:ENSMUSP00000007754.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000007754Re-query CCDS DB by Protein ID:ENSMUSP00000007754
Original member Current member EBI ENSMUST00000150969.7 ENSMUSP00000114193.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000150969.7Link to Ensembl Protein Viewer:ENSMUSP00000114193.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000150969Re-query CCDS DB by Protein ID:ENSMUSP00000114193
Original member Current member NCBI NM_032544.4 NP_115933.2 Accepted alive Link to Nucleotide Sequence:NM_032544.4Link to Protein Sequence:NP_115933.2Re-query CCDS DB by Nucleotide ID:NM_032544Re-query CCDS DB by Protein ID:NP_115933Link to BLAST:NP_115933.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115933.2 492 Q923K4-1 492 100% 0 0

Chromosomal Locations for CCDS 40384.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 71488788 71488840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71489071 71489318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71489428 71489514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71490335 71490537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71490895 71490967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71491066 71491209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71491425 71491590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71492077 71492355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71492539 71492764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGTGGCGTGGGCTGAGCGCCCTGGTGACCCAGGCGGCGTGGGCGCCCCTCAGGCTGTGCGCACGCTGCA
GCACCAGTGCAGAGTCCTTAGTCCCCAGCAGCACCATCTTCGCACTCAGCTCCGGCCAGGGACGCTGCGC
CATCGCAGTGATCCGCACCAGCGGTCCAGCTAGCGGGCTCGCGCTCCGCAGCCTCACGGCGCTCCAGGAG
CCGCCTCCTGCCCGCAGAGCCTGCCTGCGCCTTCTCCGCCACCCGTGCTCCGGGGAGCCACTGGACCGCT
CACTCGTCCTCTGGTTCCCAGGACCCCAGAGTTTCACGGGTGAGGATTGCGTGGAGTTTCACGTACACGG
AGGTCCTGCGGTGGTCAGCGGTGTCTTGCAGGCATTGGGTAGTGTGCCAGGACTGCGGCCAGCCGAGGCC
GGAGAGTTCACCAGGAGGGCATTTGCCCATGGCAAGCTGAGCCTGACTGAAGTGGAGGGACTGGCAGATC
TTATCCGTGCAGAAACTGAGGCCCAGCGTCGACAGGCTCTGAGGCAGCTGGATGGGGAACTGAGCCAGCT
CTGCCAGGGCTGGGCAAAGACTCTCACCAAGGCTCTGGCCTATGTGGAGGCCTACATTGACTTCGGAGAG
GATGATAATTTGGAAGAGGGTGTGTTGGAGCAGGCGGACAGAGAAGTTCGAGCCCTGGAGGTGGCGCTGG
GTTCCCACCTGCGAGATGCTAGGCGTGGACAAAGGCTCCTCTCGGGGGCAAATGTTGTGGTCACTGGACC
TCCCAATGCGGGCAAGAGCAGTCTGGTGAATCTACTCAGCCAAAAGCCAGTGTCCATCGTGTCCCCAGAG
CCTGGGACCACCCGTGACGTGCTGGAGACTCCCGTGGACTTGGCTGGGTTCCCTGTCTTGCTGAGCGACA
CTGCAGGGCTCCGGGAAGGCGTGGGCGCTGTTGAGCAGGAGGGTGTGCGCAGGGCCCGCCACAGGCTGGA
GCAGGCTGACATCATTCTGGGGGTGCTGGACGCCTCCGACCTGGCCTCCTCATCCAGCTGCAGCTTCCTG
GACACTGTAGTGACCCCACTGCTAGCACAAAGCCAAGACAGCGGTGGGCAGCGCCTCCTGCTGCTGCTCA
ACAAATCTGATCTGCTGTCTGCTAATGCCCCAGCCTGCGACATAGCCCTGCCTCCTCACCTGCTCCTGTC
CTGCCACACGGGAGCCGGGATGGACAGCCTCCTGCAGGCCCTGAAGACCGAGCTGGCTGCGGTGTGTGGG
GACCCATCCACAGGACCACCGCTCTTGACCCGGGTCAGGCACCAGTACCACCTCCAGGGCTGCCTGGATG
CCTTGGGCCACTACCAGCTGGCCACAGACCTGGCTCTGGCGGCCGAGGCCCTGCGCCAGGCTCGGAGGCA
ACTAAATCACCTCACAGGTGGAGGAGGAACGGAGGAGATCCTGGATCTCATCTTCCAGGACTTCTGTGTG
GGCAAGTGA

Translation (492 aa):
MWRGLSALVTQAAWAPLRLCARCSTSAESLVPSSTIFALSSGQGRCAIAVIRTSGPASGLALRSLTALQE
PPPARRACLRLLRHPCSGEPLDRSLVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEA
GEFTRRAFAHGKLSLTEVEGLADLIRAETEAQRRQALRQLDGELSQLCQGWAKTLTKALAYVEAYIDFGE
DDNLEEGVLEQADREVRALEVALGSHLRDARRGQRLLSGANVVVTGPPNAGKSSLVNLLSQKPVSIVSPE
PGTTRDVLETPVDLAGFPVLLSDTAGLREGVGAVEQEGVRRARHRLEQADIILGVLDASDLASSSSCSFL
DTVVTPLLAQSQDSGGQRLLLLLNKSDLLSANAPACDIALPPHLLLSCHTGAGMDSLLQALKTELAAVCG
DPSTGPPLLTRVRHQYHLQGCLDALGHYQLATDLALAAEALRQARRQLNHLTGGGGTEEILDLIFQDFCV
GK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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