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Report for CCDS48516.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48516.1 Public Mus musculus 10 Sgk1 23 108 98 CCDS HistoryNCBI Gene:20393Re-query CCDS DB by CCDS ID:48516.1Re-query CCDS DB by GeneID:20393See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48516.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100036.9 ENSMUSP00000097614.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100036.9Link to Ensembl Protein Viewer:ENSMUSP00000097614.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100036Re-query CCDS DB by Protein ID:ENSMUSP00000097614
Original member Current member NCBI NM_001161849.2 NP_001155321.1 Accepted alive Link to Nucleotide Sequence:NM_001161849.2Link to Protein Sequence:NP_001155321.1Re-query CCDS DB by Nucleotide ID:NM_001161849Re-query CCDS DB by Protein ID:NP_001155321Link to BLAST:NP_001155321.1

Chromosomal Locations for CCDS 48516.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 21992374 21992407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 21994966 21995041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 21995474 21995549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 21995794 21995898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 21996026 21996109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 21996223 21996354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 21996559 21996671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 21996979 21997102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 21997342 21997437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 21997898 21998053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 21998160 21998249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 21998660 21998827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGAAAGAGGAGACCTTAAGATCCCCTTGGAAAGCTTTTATGAAACAGAGAAGGATGGGCCTGAACGATT
TTATTCAGAAGATTGCCAGCAACACCTATGCATGCAAACACGCTGAAGTTCAGTCCATTTTGAAAATGTC
CCATCCTCAGGAGCCGGAGCTTATGAACGCTAACCCCTCTCCTCCGCCAAGTCCCTCTCAACAAATCAAC
CTGGGTCCGTCCTCCAACCCTCACGCCAAACCCTCCGACTTTCACTTCTTGAAAGTGATCGGAAAGGGCA
GTTTTGGAAAGGTTCTTCTGGCTAGGCACAAGGCAGAAGAAGTATTCTATGCAGTCAAAGTTTTACAGAA
GAAAGCCATCCTGAAGAAGAAAGAGGAGAAGCATATTATGTCAGAGCGGAATGTTCTGTTGAAGAATGTG
AAGCACCCTTTCCTGGTGGGCCTTCACTTCTCATTCCAGACCGCTGACAAGCTCTACTTTGTCCTGGACT
ACATTAATGGTGGAGAGCTGTTCTACCATCTCCAGAGGGAGCGCTGCTTCCTGGAACCACGGGCTCGATT
CTACGCAGCTGAAATAGCCAGTGCCCTGGGCTATCTGCACTCCCTAAACATCGTTTATAGAGACTTAAAA
CCTGAGAATATTCTCCTAGACTCCCAGGGGCACATCGTCCTCACTGACTTTGGGCTCTGCAAAGAGAATA
TTGAGCATAACGGGACAACATCTACCTTCTGTGGCACGCCTGAGTATCTGGCTCCTGAGGTCCTCCATAA
GCAGCCGTATGACCGGACGGTGGACTGGTGGTGTCTTGGGGCTGTCCTGTATGAGATGCTCTACGGCCTG
CCCCCGTTTTATAGCCGGAACACGGCTGAGATGTACGACAATATTCTGAACAAGCCTCTCCAGTTGAAAC
CAAATATTACAAACTCGGCAAGGCACCTCCTGGAAGGCCTCCTGCAGAAGGACCGGACCAAGAGGCTGGG
TGCCAAGGATGACTTTATGGAGATTAAGAGTCATATTTTCTTCTCTTTAATTAACTGGGATGATCTCATC
AATAAGAAGATTACACCCCCATTTAACCCAAATGTGAGTGGGCCCAGTGACCTTCGGCACTTCGATCCCG
AGTTTACCGAGGAGCCGGTCCCCAGCTCCATCGGCAGGTCCCCTGACAGCATCCTTGTCACGGCCAGTGT
GAAGGAAGCAGCAGAAGCCTTCCTCGGCTTCTCCTATGCACCTCCTGTGGATTCCTTCCTCTGA

Translation (417 aa):
MKEETLRSPWKAFMKQRRMGLNDFIQKIASNTYACKHAEVQSILKMSHPQEPELMNANPSPPPSPSQQIN
LGPSSNPHAKPSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNV
KHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNIVYRDLK
PENILLDSQGHIVLTDFGLCKENIEHNGTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGL
PPFYSRNTAEMYDNILNKPLQLKPNITNSARHLLEGLLQKDRTKRLGAKDDFMEIKSHIFFSLINWDDLI
NKKITPPFNPNVSGPSDLRHFDPEFTEEPVPSSIGRSPDSILVTASVKEAAEAFLGFSYAPPVDSFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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