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Report for CCDS49099.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49099.1 Public Mus musculus 12 Slc39a9 23 108 98 CCDS HistoryNCBI Gene:328133Re-query CCDS DB by CCDS ID:49099.1Re-query CCDS DB by GeneID:328133See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49099.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085245.6 ENSMUSP00000082343.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085245.6Link to Ensembl Protein Viewer:ENSMUSP00000082343.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000085245Re-query CCDS DB by Protein ID:ENSMUSP00000082343
Original member Current member NCBI NM_026244.2 NP_080520.2 Accepted alive Link to Nucleotide Sequence:NM_026244.2Link to Protein Sequence:NP_080520.2Re-query CCDS DB by Nucleotide ID:NM_026244Re-query CCDS DB by Protein ID:NP_080520Link to BLAST:NP_080520.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080520.2 308 Q8BFU1 308 100% 0 0

Chromosomal Locations for CCDS 49099.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 80644881 80644976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80662470 80662578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80666535 80666735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80673226 80673294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80675849 80675934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80677132 80677266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80679475 80679705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGGATGACTTTCTCTCCATTAGTCTGCTGTCTGTGGCAATGTTGGTGGGATGTTACGTGGCCGGAATCA
TTCCTTTGGCTGTTAATTTCTCAGAGGAGCGGCTGAAGCTGGTGACGGTGCTGGGTGCTGGTCTTCTCTG
TGGAACTGCACTGGCGGTCATCGTCCCGGAAGGAGTGCACGCACTTTATGAAGAGGTTCTGGAGGGGAAA
CACCACCAAACCAGTGAAATGAAGCAGAATGGGATTGCCTCAGACAAAGCAGCAGAAATATCATCTGTTC
ATGAACATGAGCACAGCCATGACCACACACAGCTACATGCCTACATCGGTGTGTCCCTTGTATTGGGCTT
CGTTTTCATGTTGCTAGTGGACCAGATTGGCAGCTCCCATGTGCATTCCAGTGATGATCCAGAAACAGCA
AGGCCCAGCAGTTCCAAAATCACCACCACCCTGGGGCTAGTCGTCCATGCTGCAGCTGATGGTGTAGCTT
TGGGAGCAGCAGCCTCTACTTCACAAACTAGTGTCCAGTTAATTGTGTTCGTGGCAATAATGCTACACAA
GGCTCCAGCAGCATTTGGGCTGGTTTCCTTCCTGATGCATGCTGGTCTGGAGCGGAATCGAATCAGAAAG
CACTTGCTGGTCTTTGCATTGGCAGCACCAGCCATGTCCATGCTGACATACTTAGGATTAAGTAAGAGCA
GTAAAGAAGCCCTTTCAGAGGTCAATGCCACTGGAGTGGCCATGCTTTTCTCTGCTGGGACATTTCTTTA
TGTTGCCACCGTCCATGTCCTCCCTGAAGTGGGTGGAATGGGGCACAGCCACAAACCTGATACCACTGGA
GGGAGAGGCCTCAGCCGCCTTGAGGTGGCAGCCCTGGTTCTGGGTTGCCTCATCCCGCTCATCCTATCAA
TAGGACACCAGCATTAA

Translation (308 aa):
MDDFLSISLLSVAMLVGCYVAGIIPLAVNFSEERLKLVTVLGAGLLCGTALAVIVPEGVHALYEEVLEGK
HHQTSEMKQNGIASDKAAEISSVHEHEHSHDHTQLHAYIGVSLVLGFVFMLLVDQIGSSHVHSSDDPETA
RPSSSKITTTLGLVVHAAADGVALGAAASTSQTSVQLIVFVAIMLHKAPAAFGLVSFLMHAGLERNRIRK
HLLVFALAAPAMSMLTYLGLSKSSKEALSEVNATGVAMLFSAGTFLYVATVHVLPEVGGMGHSHKPDTTG
GRGLSRLEVAALVLGCLIPLILSIGHQH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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