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Report for CCDS49273.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49273.1 Public Mus musculus 13 Dbn1 23 108 98 CCDS HistoryNCBI Gene:56320Re-query CCDS DB by CCDS ID:49273.1Re-query CCDS DB by GeneID:56320See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49273.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109921.8 ENSMUSP00000105547.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109921.8Link to Ensembl Protein Viewer:ENSMUSP00000105547.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109921Re-query CCDS DB by Protein ID:ENSMUSP00000105547
Original member NCBI NM_001177372.1 NP_001170843.1 Updated not alive Link to Nucleotide Sequence:NM_001177372.1Link to Protein Sequence:NP_001170843.1Re-query CCDS DB by Nucleotide ID:NM_001177372Re-query CCDS DB by Protein ID:NP_001170843
Current member NCBI NM_001177372.2 NP_001170843.1 Accepted alive Link to Nucleotide Sequence:NM_001177372.2Link to Protein Sequence:NP_001170843.1Re-query CCDS DB by Nucleotide ID:NM_001177372Re-query CCDS DB by Protein ID:NP_001170843Link to BLAST:NP_001170843.1

Chromosomal Locations for CCDS 49273.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 55474223 55474293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55474456 55474561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55474860 55475536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55476146 55476316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55477551 55477680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55477777 55477836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55481349 55481412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55481539 55481690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55481913 55481990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55482151 55482297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55482413 55482487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55482692 55482804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55483387 55483442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55487863 55487948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1986 nt):
ATGGCCGGCGTCAGCTTCAGCGGCCACCGCCTGGAGCTGCTGGCGGCGTACGAGGAGGTGATCCGGGAGG
AGAGCGCAGCCGACTGGGCTCTGTACACATACGAGGATGGCTCAGATGACCTCAAGCTTGCAGCGTCAGG
AGAAGGGGGCTTGCAGGAGCTTTCCGGCCACTTCGAGAACCAGAAAGTGATGTATGGTTTCTGCAGCGTC
AAGGACTCCCAAGCTGCCCTGCCAAAATATGTGCTCATCAACTGGGTTGGTGAGGATGTGCCTGATGCCC
GAAAATGTGCTTGCGCCAGTCATGTGGCCAAGGTGGCTGAATTCTTCCAGGGTGTTGATGTCATTGTGAA
TGCCAGCAGTGTGGAAGACATCGATGCTGGTGCCATTGGGCAGCGGCTCTCCAATGGACTGGCACGGCTC
TCCAGCCCAGTATTGCACCGCCTGCGCCTTCGGGAGGATGAAAATGCTGAACCGGTGGGTACCACCTACC
AGAAGACGGATGCAGCAGTGGAGATGAAGCGGATTAACCGTGAGCAGTTTTGGGAGCAGGCCAAGAAGGA
GGAAGAGCTGCGGAAGGAGGAGGAGCGGAAGAAGGCTCTGGACGCCAGGCTCAGGTTTGAACAGGAACGG
ATGGAGCAGGAGCGGCAGGAGCAGGAAGAACGTGAGCGGCGCTACCGGGAGCGGGAGCAGCAGATTGAGG
AGCACAGGAGGAAACAGCAGAGTCTGGAAGCTGAAGAAGCCAAGAGGAGGTTAAAGGAGCAGTCTATCTT
TGGTGACCAGCGGGATGAAGAGGAAGAGTCCCAGATGAAGAAGTCGGAGTCAGAGGTGGAGGAGGCGGCT
GCCATCATTGCCCAGCGGCCTGATAACCCACGGGAGTTCTTCAGACAGCAGGAACGAGTGGCATCGGCCT
CTGGTGGCAGCTGTGACGCGCCTGCGCCTGCACCCTTCAACCACCGACCAGGCAGCCACCTGGACAGCCA
CCGGAGGATGGCACCCACTCCTATTCCCACCCGGAGCCCATCTGATTCCAGCACAGCCTCTACCCCCATC
GCTGAGCAGATCGAGAGGGCCCTGGATGAGGTCACATCCTCGCAGCCTCCACCTCCACCTCCACCACCTC
CACCAACTCAAGAGGCCCAGGAGACTACCCCAAGCCTGGATGAAGAGCTCAGCAAGGAGGCCAAAGTAAC
AGCAGCTCCTGAGGTCTGGGCTGGCTGTGCGGCAGAGCCCCCTCAGGCACAGGAACCTCCCCTGTTGCAA
AGCAGCCCCCTGGAGGACTCGATGTGCACAGAATCTCCAGAGCAGGCTGCCCTGGCTGCCCCTGCGGAGC
CTGCTGCCTCTGTCACCTCAGTAGCTGATGTCCATGCAGCTGACACCATTGAGACCACCACTGCCACTAC
TGACACCACTATTGCCAACAACGTCACCCCTGCCGCTGCCAGCCTCATTGATCTATGGCCTGGCAACGGG
GAAGAGGCCTCAACACTTCAGGCTGAACCCAGGGTGCCCACACCACCCTCAGGTGCTGAGGCCTCCCTGG
CAGAGGTGCCCCTGCTGAATGAGGCCGCTCAGGAGCCGCTGCCGCCGGTAGGCGAAGGCTGTGCTAACCT
TCTTAATTTTGATGAGCTGCCAGAACCTCCAGCCACCTTCTGTGACCCAGAGGAGGAAGTAGGAGAAACG
CTGGCTGCCTCCCAGGTCCTAACTATGCCCTCAGCTCTAGAGGAGGTAGATCAGGTGCTGGAGCAGGAGC
TGGAGCCAGAACCTCACCTGCTGACCAATGGAGAGACCACTCAAAAGGAGGGGACCCAGCAGGCCAGCGA
AGGATACTTCAGTCAGTCACAGGAGGAAGAGTTCGCCCAATCAGAAGAGCCATGTGCAAAGGTTCCGCCT
CCTGTATTTTACAACAAGCCTCCAGAAATCGACATCACCTGCTGGGATGCAGACCCAGTTCCTGAAGAGG
AAGAGGGCTTCGAGGGTGGTGATTAG

Translation (661 aa):
MAGVSFSGHRLELLAAYEEVIREESAADWALYTYEDGSDDLKLAASGEGGLQELSGHFENQKVMYGFCSV
KDSQAALPKYVLINWVGEDVPDARKCACASHVAKVAEFFQGVDVIVNASSVEDIDAGAIGQRLSNGLARL
SSPVLHRLRLREDENAEPVGTTYQKTDAAVEMKRINREQFWEQAKKEEELRKEEERKKALDARLRFEQER
MEQERQEQEERERRYREREQQIEEHRRKQQSLEAEEAKRRLKEQSIFGDQRDEEEESQMKKSESEVEEAA
AIIAQRPDNPREFFRQQERVASASGGSCDAPAPAPFNHRPGSHLDSHRRMAPTPIPTRSPSDSSTASTPI
AEQIERALDEVTSSQPPPPPPPPPPTQEAQETTPSLDEELSKEAKVTAAPEVWAGCAAEPPQAQEPPLLQ
SSPLEDSMCTESPEQAALAAPAEPAASVTSVADVHAADTIETTTATTDTTIANNVTPAAASLIDLWPGNG
EEASTLQAEPRVPTPPSGAEASLAEVPLLNEAAQEPLPPVGEGCANLLNFDELPEPPATFCDPEEEVGET
LAASQVLTMPSALEEVDQVLEQELEPEPHLLTNGETTQKEGTQQASEGYFSQSQEEEFAQSEEPCAKVPP
PVFYNKPPEIDITCWDADPVPEEEEGFEGGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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