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Report for CCDS49374.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49374.1 Public Mus musculus 14 Gm2897 23 108 98 CCDS HistoryNCBI Gene:100040671Re-query CCDS DB by CCDS ID:49374.1Re-query CCDS DB by GeneID:100040671See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49374.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166494.1 ENSMUSP00000126277.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166494.1Link to Ensembl Protein Viewer:ENSMUSP00000126277.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166494Re-query CCDS DB by Protein ID:ENSMUSP00000126277
Original member Current member NCBI NM_001177715.2 NP_001171186.1 Accepted alive Link to Nucleotide Sequence:NM_001177715.2Link to Protein Sequence:NP_001171186.1Re-query CCDS DB by Nucleotide ID:NM_001177715Re-query CCDS DB by Protein ID:NP_001171186Link to BLAST:NP_001171186.1

Chromosomal Locations for CCDS 49374.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 3070131 3070258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 3071209 3071340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 3072016 3072198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 3075708 3075783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGACCAAGAAGAGATCAAAAATAAATGAACTAGAAGAACTGAAATTGGATATGAGGAAGATCAGCAATG
ACATGGAGGAAATGTGTGGAATCCTGAACCTTTACATGTATGAGGATTTGAACTACAGGATGAACACTGA
ATTCAACATCATTAAATCACAACATGAGAAGACAATGTTGGATATGAATAAAATGATCCAGTCCATAATT
GGTTCCATGCAGTACTCCAAGGAACTGATAGAAGATAACTATTCCTACAGCATTAAGGAGGACCACCTCC
TCCGTGAGTGCACTCAACTCAACGAAAACGTAAGGATATTACTGAATGAGAACAGAAGGCTGCTGGTGGA
GCAGGCTGGCCATAAGTGTCCTGTGGGGAAGAAAAGAGGTTCTGTGAGGAGGCCAGCAAGAACATCTGTG
TCCCAAGTGCCAAGGAACAGCAGTCCAGCAGAAAGCAGAACATGGCACAGACCAGGACATGATCTCCCTC
AAAGAGAAGTGCTGGAGGAAGAGCACTGA

Translation (172 aa):
MTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSII
GSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSVRRPARTSV
SQVPRNSSPAESRTWHRPGHDLPQREVLEEEH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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