NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50902.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50902.1 Public Mus musculus 3 Pcdh10 23 108 98 CCDS HistoryNCBI Gene:18526Re-query CCDS DB by CCDS ID:50902.1Re-query CCDS DB by GeneID:18526See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50902.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170695.3 ENSMUSP00000132769.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170695.3Link to Ensembl Protein Viewer:ENSMUSP00000132769.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170695Re-query CCDS DB by Protein ID:ENSMUSP00000132769
Original member Current member NCBI NM_001098171.1 NP_001091641.1 Accepted alive Link to Nucleotide Sequence:NM_001098171.1Link to Protein Sequence:NP_001091641.1Re-query CCDS DB by Nucleotide ID:NM_001098171Re-query CCDS DB by Protein ID:NP_001091641Link to BLAST:NP_001091641.1

Chromosomal Locations for CCDS 50902.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 45379253 45381883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45383531 45383589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45384100 45384206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45392569 45392874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45419407 45419426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3123 nt):
ATGATTGTGCTGTTATTCTTTGCCTTGCTCTGGATGGTGGACGGAGTCTTTTCCCAGCTTCATTATACTG
TGCAGGAAGAGCAGGAACATGGCACTTTCGTGGGGAATATCGCTGAAGACCTGGGCTTGGACATTACAAA
ACTTTCAGCTCGCAGGTTTCAGACGGTGGCCAACTCACGGACCCCTTACTTGGACCTCAATCTGGAGACC
GGGGTTCTGTACGTAAACGAGAAGATAGATCGCGAGCAAATCTGTAAGCAGAGCCCCTCTTGTGTCCTGC
ACCTGGAGGTCTTTCTGGAGAACCCGCTGGAGCTGTTCCGAGTGGAGATCGAAGTGCTGGACATCAATGA
CAACCCTCCCTCCTTCCCAGAGCCCGACCTGACAGTGGAGATCTCAGAGAGCGCCACGCCAGGCACCCGC
TTTCCCTTGGAGAGCGCCTTCGACCCAGACGTGGGGACCAACTCCTTGCGAGACTACGAGATAACCCCAA
ATAGCTACTTCTCGCTAGACGTACAGACCCAGGGAGATGGCAACCGATTCGCCGAACTGGTCCTGGAGAA
GCCACTGGACCGAGAACAGCAAGCGGTGCACCGCTACGTGCTGACCGCGGTGGACGGGGGAGGAGGGGGA
GGAGGAGGGGAAGGAGGGGGAGGCGGTGGGGGAGCCGGCCTGCCCCCCCAGCAGCAGCGTACTGGCACGG
CCTTGCTCACCATCCGAGTGCTCGACTCCAACGACAATGTGCCCGCTTTTGACCAACCCGTCTACACAGT
TTCCCTACCAGAGAATTCTCCCCCTGGCACGCTAGTGATCCAGCTTAATGCCACCGACCCTGATGAAGGC
CAGAATGGCGAGGTCGTGTACTCGTTCAGTAGTCACATTTCACCCAGGGCTCGGGAGCTCTTCGGACTGT
CGCCGCGCACCGGCCGGCTGGAGGTGAGCGGCGAGCTGGACTATGAAGAGAGCCCAGTGTATCAGGTGTA
TGTCCAAGCCAAGGACTTGGGTCCCAATGCTGTGCCTGCGCACTGCAAGGTTCTGGTGAGAGTGCTGGAT
GCCAACGACAACGCACCAGAGATCAGCTTCAGCACAGTGAAAGAGGCGGTGAGCGAGGGTGCGGCCCCTG
GCACGGTGGTGGCTCTGTTCAGCGTGACCGATCGGGACTCAGAGGAGAACGGGCAGGTGCAGTGTGAGCT
TCTGGGAGACGTGCCGTTCCGCCTCAAGTCTTCCTTCAAGAATTACTACACTATCGTGACCGAAGCCCCC
TTGGACCGAGAGGCTGGGGACTCCTACACCCTGACCGTGGTGGCCCGCGACCGGGGCGAGCCTGCACTCT
CCACCAGTAAGTCGATCCAGGTTCAAGTGTCAGATGTGAATGACAATGCGCCGCGCTTCAGCCAGCCGGT
CTACGACGTGTATGTGACAGAAAACAATGTGCCGGGTGCCTACATTTACGCGGTGAGCGCCACGGACCGC
GACGAAGGGGCCAATGCAAAATTAACCTACTCTATCCTAGAGTGCCAGATCCAAGGAATGAGTGTCTTCA
CCTACGTGTCCATCAACTCAGACAACGGCTACTTGTACGCCCTGAGATCCTTCGACTATGAGCAGATCAA
GGACTTCAGCTTTCAAGTAGAAGCCCGGGACGCCGGCAGTCCCCAGGCGCTGGCCGGCAATGCCACGGTC
AACATCTTGATAGTGGATCAGAACGACAACGCCCCCGCCATCGTGGCGCCCCTTCCGGGGCGCAACGGGA
CTCCAGCCCGCGAGGTGCTGCCGCGCTCTGCCGAACCCGGCTACCTGCTCACTCGTGTGGCCGCAGTGGA
CGCGGACGACGGCGAGAACGCCAGGCTCACCTACAGCATAGTGCGGGGCAACGAAATGAACCTCTTTCGA
CTGGACTGGCGCACCGGAGAGCTCCGCACCGCGCGCCGGGTCCCAGCCAAGCGCGACCCCCAGCGGCCTT
ATGAGCTGGTGATCGAGGTGCGCGACCACGGGCAGCCGCCCCTGTCCTCCACAGCCACCCTGGTGGTTCA
GCTGGTGGATGGAGCGGTGGAGCCACAGGGCGGGGGCGGGGACCGAGGCGGAGGGTCTGGGGAACACCTG
CGTCCCAGCCGCTCTGGCGGCGGGGAAACTTCACTGGACCTCACACTTATCCTTATCATCGCCCTGGGCT
CGGTGTCCTTCATCTTCCTGCTGGCCATGATCGTGTTGGCCGTGCGCTGTCAGAAAGAGAAAAAACTCAA
CATCTACACGTGTCTCGCGAGCGATTGCTGCCTCTGCTGCTGCTGCTGCGGCAATGGGAGCTCCACCTGC
TGCGGCCGCCAAGCCCGGGCGCGCAAGAAGAAACTCAGCAAGTCAGATATCATGTTGGTGCAGAGCGCCA
ACGTCCCTAGCAACCCGGCCCAGGTGCCGGTAGAGGAGTCCGGAGGCTTCGGTTCCCATCACCACAATCA
GAACTATTGCTATCAGGTCTGCCTCACCCCGGAGTCCGCCAAGACCGACCTGATGTTCCTGAAGCCCTGC
AGCCCTTCCCGGAGTACAGATGCTGAGCACAATCCCTGCGGAGCCATCGTCACCGGGTACAGCGACCAGC
AACCAGACATCATTTCCAACGGAAGCATTTTGTCCAACGAGAATAAACACCAGCGAGCAGAGCTCAGCTA
TCTAGTTGACAGACCTCGCCGAGTTAACAGTTCTGCATTCCAGGAAGCTGACATAGTAAGCTCTAAGGAC
AGTGGTCATGGAGACAGTGAACAGGGAGACAGTGATCATGATGTCACCAACCGTGGCCAGTCAGCTGGTA
TGGATCTTTTCTCCAACTGCACCGAGGAATGTAAAGCACTGGGCCACTCTGACCGATGCTGGATGCCTTC
TTTTGTCCCTTCGGATGGACGCCAGGCTGCAGATTACCGCAGCAACCTGCATGTCCCCGGCATGGACTCT
GTTCCAGACACCGAGGTCTTTGAACCTCCAGAAGTCCAGCCTGGGGCAGAGCGCTCCTTCTCCACTTTCG
GCAAAGAGAAGGCCCTGCATGGCACCCTGGAGAGGAAGGAGTTGGACGGATTGCTGTCTAATACACGAGC
GCCTTACAAACCACCATATTTGACGCGGAAAAGGATATGCTAG

Translation (1040 aa):
MIVLLFFALLWMVDGVFSQLHYTVQEEQEHGTFVGNIAEDLGLDITKLSARRFQTVANSRTPYLDLNLET
GVLYVNEKIDREQICKQSPSCVLHLEVFLENPLELFRVEIEVLDINDNPPSFPEPDLTVEISESATPGTR
FPLESAFDPDVGTNSLRDYEITPNSYFSLDVQTQGDGNRFAELVLEKPLDREQQAVHRYVLTAVDGGGGG
GGGEGGGGGGGAGLPPQQQRTGTALLTIRVLDSNDNVPAFDQPVYTVSLPENSPPGTLVIQLNATDPDEG
QNGEVVYSFSSHISPRARELFGLSPRTGRLEVSGELDYEESPVYQVYVQAKDLGPNAVPAHCKVLVRVLD
ANDNAPEISFSTVKEAVSEGAAPGTVVALFSVTDRDSEENGQVQCELLGDVPFRLKSSFKNYYTIVTEAP
LDREAGDSYTLTVVARDRGEPALSTSKSIQVQVSDVNDNAPRFSQPVYDVYVTENNVPGAYIYAVSATDR
DEGANAKLTYSILECQIQGMSVFTYVSINSDNGYLYALRSFDYEQIKDFSFQVEARDAGSPQALAGNATV
NILIVDQNDNAPAIVAPLPGRNGTPAREVLPRSAEPGYLLTRVAAVDADDGENARLTYSIVRGNEMNLFR
LDWRTGELRTARRVPAKRDPQRPYELVIEVRDHGQPPLSSTATLVVQLVDGAVEPQGGGGDRGGGSGEHL
RPSRSGGGETSLDLTLILIIALGSVSFIFLLAMIVLAVRCQKEKKLNIYTCLASDCCLCCCCCGNGSSTC
CGRQARARKKKLSKSDIMLVQSANVPSNPAQVPVEESGGFGSHHHNQNYCYQVCLTPESAKTDLMFLKPC
SPSRSTDAEHNPCGAIVTGYSDQQPDIISNGSILSNENKHQRAELSYLVDRPRRVNSSAFQEADIVSSKD
SGHGDSEQGDSDHDVTNRGQSAGMDLFSNCTEECKALGHSDRCWMPSFVPSDGRQAADYRSNLHVPGMDS
VPDTEVFEPPEVQPGAERSFSTFGKEKALHGTLERKELDGLLSNTRAPYKPPYLTRKRIC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH