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Report for CCDS52377.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52377.1 Reviewed, update pending Mus musculus 7 Knop1 23 108 98 CCDS HistoryNCBI Gene:66356Re-query CCDS DB by CCDS ID:52377.1Re-query CCDS DB by GeneID:66356See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 52377.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063607.11 ENSMUSP00000068142.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063607.11Link to Ensembl Protein Viewer:ENSMUSP00000068142.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000063607Re-query CCDS DB by Protein ID:ENSMUSP00000068142
Original member NCBI NM_001168218.1 NP_001161690.1 Updated not alive Link to Nucleotide Sequence:NM_001168218.1Link to Protein Sequence:NP_001161690.1Re-query CCDS DB by Nucleotide ID:NM_001168218Re-query CCDS DB by Protein ID:NP_001161690
Current member NCBI NM_001168218.2 NP_001161690.2 Pending alive Link to Nucleotide Sequence:NM_001168218.2Link to Protein Sequence:NP_001161690.2Re-query CCDS DB by Nucleotide ID:NM_001168218Re-query CCDS DB by Protein ID:NP_001161690Link to BLAST:NP_001161690.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161690.2 318 Q9Z2Q2-2 318 100% 0 0

Chromosomal Locations for CCDS 52377.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 118845783 118846094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118848449 118848574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118850621 118850689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118852889 118853340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118855623 118855776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGGACGCGGTTTCTACAGCAACCCAGGGCACCGGGAGGCCGCGACCCGGAAGGAGAAGGATTTCGAGGG
GGCGGGCCAGAAAGTCGAAGCTGACTTCCGGATCGCGGCTGCGCGGCTGCTCACGCGGGGACGCTTGGCC
TGCTAGCGAACCAGTAATGGTCAGCAAGACCCAGAAAGCAGACCTGGGCCCACAACTCCCAGAGAAGAAG
AAAAAGAAGAAGAAGAAAAAGAGAGTGGTTGCAAATGTCTCAGAACCAGAGACTCAATACTCAGTCTTAA
ACAGTAATGATTATTTTATAGACGCTTCTCCTCCGAGGGCCACGTCCCCTTCTAACAATGTGGATGAGGT
GCAGATCCCCGAGATATCACTGAGCAAGAGAAAGAAGAAAAAAAAGTCCTGTAGCACTCACTTGGAGGAG
TGCCTGGGGGCTGAGCCTACACGGGCAAGGCAGAAAAAGTCACCTAGCCCTAGAAGGCAGGCCCTTGAGC
AGTCAGCAGAAGGCCTCATCAGAGAGAAGAAAAAGAAGAGGCGGAAGTCCTTATCAAAGGCTGCCTCCCA
AGGCTCAGGGCTGAAGACCTCCCCAGACCCCAAGCATGCCAAGGAGGAGTCAGACACAGACTTAGAGGTG
GTACTGGAGAAAAAAGGCAACATGGATGAGACCTGCATAGACCAGGTGAGACGGAAGGCCTTGCAAGAAG
AGATTGATCGTGAGTCGGGCAAGACAGAGGCTTCAGAACCCAAAAAGTGGACAGTGGGTTTGTCGGTCAA
GACAGAGGCTTCAGAACCCAAAAAGTGGACGGGAACCCAGTTTGGCCAGTGGGATACTGCCGGCTTTGAA
AATGAAGAACAGAAGCTAAAATTCCTGAAGCTTATGGGTGGCTTTAAGCATCTGTCCCCGTCATTCAGCC
GCCCTCCCAGCATGACTATCAGGTCCAACATGGCCCTGGACAAAAAGTCTTCAGAAATGCTCCAGCAGAG
TCTGCAGCAGGACTATGACCGGGCCATGAGCTGGAAGTACAGCCACGGGGCTGGCCTGGGCTTTAACTCT
GAGGCCCGAAAGGTCTTCTACATTGACCGGAATGCCTCCAAGTCTATCAAGTTGCAAGATTAA

Translation (370 aa):
MDAVSTATQGTGRPRPGRRRISRGRARKSKLTSGSRLRGCSRGDAWPASEPVMVSKTQKADLGPQLPEKK
KKKKKKKRVVANVSEPETQYSVLNSNDYFIDASPPRATSPSNNVDEVQIPEISLSKRKKKKKSCSTHLEE
CLGAEPTRARQKKSPSPRRQALEQSAEGLIREKKKKRRKSLSKAASQGSGLKTSPDPKHAKEESDTDLEV
VLEKKGNMDETCIDQVRRKALQEEIDRESGKTEASEPKKWTVGLSVKTEASEPKKWTGTQFGQWDTAGFE
NEEQKLKFLKLMGGFKHLSPSFSRPPSMTIRSNMALDKKSSEMLQQSLQQDYDRAMSWKYSHGAGLGFNS
EARKVFYIDRNASKSIKLQD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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