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Report for CCDS57761.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57761.1 Public Mus musculus X Cd99l2 23 108 98 CCDS HistoryNCBI Gene:171486Re-query CCDS DB by CCDS ID:57761.1Re-query CCDS DB by GeneID:171486See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57761.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037391.11 ENSMUSP00000042606.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037391.11Link to Ensembl Protein Viewer:ENSMUSP00000042606.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000037391Re-query CCDS DB by Protein ID:ENSMUSP00000042606
Original member Current member NCBI NM_001199349.1 NP_001186278.1 Accepted alive Link to Nucleotide Sequence:NM_001199349.1Link to Protein Sequence:NP_001186278.1Re-query CCDS DB by Nucleotide ID:NM_001199349Re-query CCDS DB by Protein ID:NP_001186278Link to BLAST:NP_001186278.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186278.1 237 Q8BIF0-1 237 100% 0 0

Chromosomal Locations for CCDS 57761.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 71422685 71422749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71424024 71424089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71429047 71429166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71430311 71430349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71438134 71438199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71440525 71440611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71441074 71441145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71449939 71450007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71450611 71450673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71492522 71492588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGGTGGCCAGGCTCACGGCTTTCCTCGTTTGCCTCGTTTTCTCCTTGGCCACCCTTGTCCAGAGAGGAT
ATGGAGACACAGATGGTTTTAATCTGGAGGATGCACTGAAAGAAACTTCCTCAGTAAAGCAGAGATGGGA
CCACTTCAGCACCACGACTAGGAGGCCAGTAACAACCAGAGCCCCAGCAAATCCAGCAGAGAGATGGGAC
CATGTTGCCACTACTACAACTAGAAGGCCAGGAACAACTAGAGCACCATCAAATCCTATGGAACTAGATG
GGTTTGACTTGGAAGATGCCTTGGATGATCGAAATGATCTAGATGGTCCCAAAAAGCCAAGTGCAGGAGA
AGCAGGAGGTTGGTCAGACAAGGATCTTGAAGACATCGTGGAAGGTGGGGGATACAAACCTGACAAGAAT
AAAGGCGGTGGTGGTTATGGCAGCAACGATGACCCTGGATCTGGCATATCGACAGAAACTGGCACCATTG
CAGGTGTGGCCAGTGCCCTTGCTATGGCCCTGATTGGAGCTGTATCCAGCTACATCTCCTACCAGCAGAA
GAAGTTTTGCTTCAGCATTCAGCAGGGCCTCAATGCAGACTACGTGAAGGGGGAGAACCTGGAAGCTGTT
GTGTGTGAGGAGCCCCAAGTGACATACTCAAAACAAGAAACGCAGTCTGCAGAACCCCCACCACCCGAGC
CACCCCGGATTTGA

Translation (237 aa):
MVARLTAFLVCLVFSLATLVQRGYGDTDGFNLEDALKETSSVKQRWDHFSTTTRRPVTTRAPANPAERWD
HVATTTTRRPGTTRAPSNPMELDGFDLEDALDDRNDLDGPKKPSAGEAGGWSDKDLEDIVEGGGYKPDKN
KGGGGYGSNDDPGSGISTETGTIAGVASALAMALIGAVSSYISYQQKKFCFSIQQGLNADYVKGENLEAV
VCEEPQVTYSKQETQSAEPPPPEPPRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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