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Report for CCDS66473.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
66473.1 Public Homo sapiens 12 RITA1 24 110 108 CCDS HistoryNCBI Gene:84934Re-query CCDS DB by CCDS ID:66473.1Re-query CCDS DB by GeneID:84934See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 66473.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000552495.1 ENSP00000448680.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000552495.1Link to Ensembl Protein Viewer:ENSP00000448680.1Re-query CCDS DB by Nucleotide ID:ENST00000552495Re-query CCDS DB by Protein ID:ENSP00000448680
Original member Current member NCBI NM_001286215.2 NP_001273144.1 Accepted alive Link to Nucleotide Sequence:NM_001286215.2Link to Protein Sequence:NP_001273144.1Re-query CCDS DB by Nucleotide ID:NM_001286215Re-query CCDS DB by Protein ID:NP_001273144Link to BLAST:NP_001273144.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273144.1 293 Q96K30-3 293 100% 0 0

Chromosomal Locations for CCDS 66473.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 113186014 113186021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113186683 113187048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113191310 113191817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGCTCAGGGAGCCTCGGAAGCAGGGCCTGGCCGGCAGAGCACACCTGCTGTCACCAGGGACCACAGGCA
GCATGAAGACCCCCGTGGAGCTGGCCGTCAGTGGGATGCAGACCCTCGGCCTTCAGCACCGCTGCCGAGG
TGGCTACCGGGTCAAGGCCAGGACGTCATATGTGGATGAGACTCTGTTTGGCAGCCCAGCAGGCACCCGG
CCTACCCCACCGGACTTCGATCCGCCCTGGGTGGAGAAGGCTAACAGAACCAGAGGCGTGGGCAAGGAGG
CATCGAAGGCCTTGGGGGCAAAGGGGAGCTGTGAGACCACCCCCTCAAGGGGCAGCACCCCCACCCTCAC
ACCAAGGAAGAAGAACAAATACAGACCCATCAGCCACACCCCGTCTTACTGTGATGAGTCGCTGTTTGGC
TCCCGATCTGAAGGCGCCAGCTTCGGGGCCCCGCGGATGGCGAAGGGGGATGCCGCAAAGCTCCGTGCTC
TCTTGTGGACGCCACCACCTACCCCCAGGGGTAGCCACTCGCCCCGCCCCAGGGAGGCACCACTGCGAGC
CATTCACCCAGCTGGTCCCTCCAAGACAGAGCCGGGGCCAGCGGCAGACTCCCAGAAGTTATCTATGGGT
GGGTTACACTCTTCACGCCCCCTGAAGCGGGGACTTTCCCATTCCCTCACCCACCTGAATGTCCCCAGCA
CTGGTCATCCAGCCACCAGTGCCCCCCACACAAATGGGCCTCAGGATCTCAGGCCTTCCACGTCAGGGGT
GACCTTCCGGAGCCCCCTGGTGACTTCCAGGGCTCGCTCAGTTAGCATTTCAGTGCCATCTACCCCACGA
CGAGGTGGGGCCACCCAGAAACCAAAGCCCCCTTGGAAATGA

Translation (293 aa):
MLREPRKQGLAGRAHLLSPGTTGSMKTPVELAVSGMQTLGLQHRCRGGYRVKARTSYVDETLFGSPAGTR
PTPPDFDPPWVEKANRTRGVGKEASKALGAKGSCETTPSRGSTPTLTPRKKNKYRPISHTPSYCDESLFG
SRSEGASFGAPRMAKGDAAKLRALLWTPPPTPRGSHSPRPREAPLRAIHPAGPSKTEPGPAADSQKLSMG
GLHSSRPLKRGLSHSLTHLNVPSTGHPATSAPHTNGPQDLRPSTSGVTFRSPLVTSRARSVSISVPSTPR
RGGATQKPKPPWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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