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Report for CCDS71150.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71150.1 Public Mus musculus 2 Cds2 23 108 98 CCDS HistoryNCBI Gene:110911Re-query CCDS DB by CCDS ID:71150.1Re-query CCDS DB by GeneID:110911See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71150.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089461.10 ENSMUSP00000086886.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089461.10Link to Ensembl Protein Viewer:ENSMUSP00000086886.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000089461Re-query CCDS DB by Protein ID:ENSMUSP00000086886
Original member Current member NCBI NM_001291039.1 NP_001277968.1 Accepted alive Link to Nucleotide Sequence:NM_001291039.1Link to Protein Sequence:NP_001277968.1Re-query CCDS DB by Nucleotide ID:NM_001291039Re-query CCDS DB by Protein ID:NP_001277968Link to BLAST:NP_001277968.1

Chromosomal Locations for CCDS 71150.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 132285963 132285965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132293245 132293381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132294384 132294480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132295531 132295628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132297225 132297364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132297634 132297692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132298469 132298551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132300554 132300641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132301232 132301300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132302080 132302232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132304359 132304478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132304853 132304956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132305153 132305285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1284 nt):
ATGGAATCAGAGTCCGAAGCAAAGCTAGATGGAGAGACAGCGTCTGACAGCGAGAGCCGAGCGGAAACAG
CTCCCCTACCAACCTCCGTAGATGACACCCCAGAGGTCCTTAACAGGGCCCTTTCCAACCTGTCCTCAAG
GTGGAAGAACTGGTGGGTGAGAGGCATCCTGACTTTGGCCATGATCGCGTTTTTCTTCATTATCATTTAC
CTGGGACCAATGGTTTTGATGATGATTGTTATGTGTGTCCAGATTAAGTGTTTCCATGAAATAATCACTA
TTGGCTACAATGTATACCACTCCTACGACCTGCCCTGGTTCAGGACCCTCAGCTGGTACTTCCTGCTGTG
TGTGAACTACTTCTTCTATGGGGAGACAGTGACGGACTACTTCTTCACTCTGGTCCAGAGAGAGGAGCCT
TTGCGGATCCTCAGTAAATACCACCGGTTCATCTCCTTTGCCCTGTATCTGACAGGATTCTGCATGTTTG
TACTGAGTCTAGTTAAGAAGCATTATCGGCTGCAGTTCTACATGTTTGGCTGGACCCATGTGACCTTGCT
TATTGTCGTAACGCAGTCACACCTTGTTATCCATAACTTGTTTGAAGGAATGATATGGTTTATTGTTCCC
ATCTCGTGCGTCATCTGCAATGACATTATGGCCTATATGTTTGGCTTTTTCTTTGGTCGGACCCCACTCA
TTAAGCTCTCTCCAAAGAAGACCTGGGAAGGCTTCATTGGGGGCTTCTTTGCCACTGTGGTGTTTGGCCT
TTTGCTCTCCTATGTGATGTCTGGGTACAGATGCTTCGTGTGTCCCGTGGAATACAACAATGACACCAAC
AGCTTCACTGTGGACTGTGAGCCGTCTGACCTATTCCGCCTGCAGGAGTACAACATCCCTGGGGTGATCC
AGTCGGCCATTGGCTGGAAAACGGTGAGGATGTACCCTTTCCAGATCCACAGCATCGCCCTCTCCACCTT
CGCCTCGCTCATCGGCCCTTTCGGAGGGTTCTTCGCCAGTGGATTCAAACGGGCCTTTAAAATCAAAGAT
TTTGCCAATACCATTCCCGGTCATGGAGGCATCATGGATCGCTTTGACTGCCAGTACCTGATGGCCACCT
TTGTCAATGTGTACATCGCCAGCTTTATCAGGGGTCCAAACCCAAGCAAACTGATCCAGCAGTTTCTGAC
GTTGCGGCCAGATCAGCAGCTTCACATCTTCAACACGCTCAAGTCTCACCTAACTGACAAGGGGATTCTG
ACATCTGCCTTGGAAGATGAGTAG

Translation (427 aa):
MESESEAKLDGETASDSESRAETAPLPTSVDDTPEVLNRALSNLSSRWKNWWVRGILTLAMIAFFFIIIY
LGPMVLMMIVMCVQIKCFHEIITIGYNVYHSYDLPWFRTLSWYFLLCVNYFFYGETVTDYFFTLVQREEP
LRILSKYHRFISFALYLTGFCMFVLSLVKKHYRLQFYMFGWTHVTLLIVVTQSHLVIHNLFEGMIWFIVP
ISCVICNDIMAYMFGFFFGRTPLIKLSPKKTWEGFIGGFFATVVFGLLLSYVMSGYRCFVCPVEYNNDTN
SFTVDCEPSDLFRLQEYNIPGVIQSAIGWKTVRMYPFQIHSIALSTFASLIGPFGGFFASGFKRAFKIKD
FANTIPGHGGIMDRFDCQYLMATFVNVYIASFIRGPNPSKLIQQFLTLRPDQQLHIFNTLKSHLTDKGIL
TSALEDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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