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Report for CCDS75020.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75020.1 Public Homo sapiens 3 ARMC8 24 110 108 CCDS HistoryNCBI Gene:25852Re-query CCDS DB by CCDS ID:75020.1Re-query CCDS DB by GeneID:25852See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75020.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000485396.5 ENSP00000417049.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000485396.5Link to Ensembl Protein Viewer:ENSP00000417049.1Re-query CCDS DB by Nucleotide ID:ENST00000485396Re-query CCDS DB by Protein ID:ENSP00000417049
Original member Current member NCBI NM_001282342.2 NP_001269271.1 Accepted alive Link to Nucleotide Sequence:NM_001282342.2Link to Protein Sequence:NP_001269271.1Re-query CCDS DB by Nucleotide ID:NM_001282342Re-query CCDS DB by Protein ID:NP_001269271Link to BLAST:NP_001269271.1

Chromosomal Locations for CCDS 75020.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 138221930 138221997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138223389 138223531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138223636 138223733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138235034 138235114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138237309 138237384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138237482 138237572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138239468 138239528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138241783 138241983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138245088 138245183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138263739 138263821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138264131 138264212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138267155 138267241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138270040 138270132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138272967 138273116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138274449 138274544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138284431 138284526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138289048 138289120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138290546 138290639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138295859 138295892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1803 nt):
ATGAAAAATGCTGTAATTGGAAACAACAAGCAGAAAGCCAATCTCATTGTTTTAGGAGCTGTTCCAAGAT
TGTTGTACTTGCTTCAGCAAGAAACCTCAAGCACAGAGCTGAAAACTGAATGTGCAGTGGTGTTGGGAAG
TCTTGCTATGGGTACTGAAAACAATGTCAAGTCTCTACTGGACTGCCATATTATCCCTGCCTTATTGCAA
GGACTACTGTCCCCAGACCTGAAGTTTATTGAAGCTTGCCTCCGATGCCTGCGTACCATCTTCACCAGTC
CTGTCACTCCAGAGGAGCTACTGTATACAGGGCCAGATCATCAAACAATTTTATTTAACCACGGTGCAGT
TCAGAATATTGCTCACCTACTAACCTCACTGTCCTACAAAGTTCGAATGCAAGCACTGAAATGTTTCTCA
GTTTTAGCTTTTGAAAACCCCCAGGTATCGATGACCCTGGTAAATGTTTTGGTTGATGGAGAATTGTTAC
CACAGATTTTTGTGAAGATGTTACAGAGGGATAAGCCTATTGAGATGCAGCTCACATCAGCAAAATGTTT
AACTTACATGTGTAGAGCTGGAGCAATTCGGACAGATGATAACTGTATTGTATTAAAGACATTACCTTGT
TTGGTTCGAATGTGCAGTAAGGAGAGATTACTAGAGGAGAGAGTTGAAGGAGCTGAGACACTTGCCTATC
TGATTGAACCAGATGTTGAGCTACAGAGAATCGCTAGCATAACTGATCACCTCATTGCCATGCTTGCTGA
TTATTTCAAGTATCCCAGCTCAGTGAGTGCCATCACTGATATTAAAAGGCTTGATCATGATTTAAAACAT
GCTCACGAACTCCGCCAGGCTGCATTCAAGCTCTATGCCTCTCTTGGAGCAAATGATGAAGACATCCGGA
AGAAGATCATTGAGACTGAAAATATGATGGACCGAATTGTGACTGGCTTGTCTGAGTCTAGTGTCAAGGT
GCGGTTAGCTGCCGTCAGATGTTTGCACAGTTTATCCAGATCTGTGCAGCAGCTTCGAACCAGTTTCCAG
GATCATGCTGTTTGGAAACCTTTAATGAAGGTTTTACAAAATGCACCAGATGAAATCCTAGTGGTAGCAT
CTTCCATGCTGTGTAATCTTCTTCTTGAATTTTCTCCAAGCAAAGAGCCAATTTTGGAATCAGGAGCCGT
AGAGCTACTTTGTGGATTAACTCAGAGTGAAAATCCTGCTTTACGAGTGAATGGAATTTGGGCTTTAATG
AATATGGCATTTCAGGCTGAACAAAAAATAAAAGCAGATATTTTACGAAGCTTGAGTACTGAACAGCTAT
TCCGGTTATTATCAGATTCAGATTTGAATGTGCTGATGAAGACATTGGGACTTCTTAGAAATCTCCTCTC
CACTCGTCCTCATATAGATAAAATAATGAGTACTCATGGAAAGCAAATTATGCAAGCCGTCACTCTTATT
CTAGAAGGGGAACATAACATTGAGGTCAAAGAGCAGACACTGTGCATCTTAGCCAACATAGCGGATGGGA
CAACAGCAAAAGATCTTATTATGACCAATGATGATATCCTACAGAAAATCAAGTATTACATGGGCCATTC
ACATGTTAAACTGCAGCTTGCAGCCATGTTTTGTATATCAAACCTCATATGGAATGAAGAGGAAGGTTCA
CAAGAACGCCAGGATAAATTACGAGACATGGGCATCGTAGATATTCTACACAAACTGAGTCAGTCACCAG
ATTCAAACCTTTGTGACAAGGCAAAGATGGCACTGCAGCAGTACCTGGCATGA

Translation (600 aa):
MKNAVIGNNKQKANLIVLGAVPRLLYLLQQETSSTELKTECAVVLGSLAMGTENNVKSLLDCHIIPALLQ
GLLSPDLKFIEACLRCLRTIFTSPVTPEELLYTGPDHQTILFNHGAVQNIAHLLTSLSYKVRMQALKCFS
VLAFENPQVSMTLVNVLVDGELLPQIFVKMLQRDKPIEMQLTSAKCLTYMCRAGAIRTDDNCIVLKTLPC
LVRMCSKERLLEERVEGAETLAYLIEPDVELQRIASITDHLIAMLADYFKYPSSVSAITDIKRLDHDLKH
AHELRQAAFKLYASLGANDEDIRKKIIETENMMDRIVTGLSESSVKVRLAAVRCLHSLSRSVQQLRTSFQ
DHAVWKPLMKVLQNAPDEILVVASSMLCNLLLEFSPSKEPILESGAVELLCGLTQSENPALRVNGIWALM
NMAFQAEQKIKADILRSLSTEQLFRLLSDSDLNVLMKTLGLLRNLLSTRPHIDKIMSTHGKQIMQAVTLI
LEGEHNIEVKEQTLCILANIADGTTAKDLIMTNDDILQKIKYYMGHSHVKLQLAAMFCISNLIWNEEEGS
QERQDKLRDMGIVDILHKLSQSPDSNLCDKAKMALQQYLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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