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Report for CCDS78955.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78955.1 Public Mus musculus 11 Mrpl55 23 108 98 CCDS HistoryNCBI Gene:67212Re-query CCDS DB by CCDS ID:78955.1Re-query CCDS DB by GeneID:67212See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78955.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108784.3 ENSMUSP00000104412.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108784.3Link to Ensembl Protein Viewer:ENSMUSP00000104412.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000108784Re-query CCDS DB by Protein ID:ENSMUSP00000104412
Original member Current member EBI ENSMUST00000108786.7 ENSMUSP00000104414.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108786.7Link to Ensembl Protein Viewer:ENSMUSP00000104414.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108786Re-query CCDS DB by Protein ID:ENSMUSP00000104414
Original member Current member EBI ENSMUST00000108787.8 ENSMUSP00000104415.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108787.8Link to Ensembl Protein Viewer:ENSMUSP00000104415.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108787Re-query CCDS DB by Protein ID:ENSMUSP00000104415
Original member Current member NCBI NM_001302334.2 NP_001289263.1 Accepted alive Link to Nucleotide Sequence:NM_001302334.2Link to Protein Sequence:NP_001289263.1Re-query CCDS DB by Nucleotide ID:NM_001302334Re-query CCDS DB by Protein ID:NP_001289263Link to BLAST:NP_001289263.1
Original member Current member NCBI NM_001302335.2 NP_001289264.1 Accepted alive Link to Nucleotide Sequence:NM_001302335.2Link to Protein Sequence:NP_001289264.1Re-query CCDS DB by Nucleotide ID:NM_001302335Re-query CCDS DB by Protein ID:NP_001289264Link to BLAST:NP_001289264.1
Original member Current member NCBI NM_001362908.1 NP_001349837.1 Accepted alive Link to Nucleotide Sequence:NM_001362908.1Link to Protein Sequence:NP_001349837.1Re-query CCDS DB by Nucleotide ID:NM_001362908Re-query CCDS DB by Protein ID:NP_001349837Link to BLAST:NP_001349837.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289263.1 134 Q9CZ83-2 134 100% 0 0
NP_001289264.1 134 Q9CZ83-2 134 100% 0 0
NP_001349837.1 134 Q9CZ83-2 134 100% 0 0

Chromosomal Locations for CCDS 78955.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 59204233 59204255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59204535 59204757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59205649 59205807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (405 nt):
ATGCCTTTGGCCATTCTGCTTAGTGCCTGCACGTCTGTCCGTAGCCTGCTGAGGCATTGTGGTGTGAGAG
CAGCCTTACCTACACCCCGCCACCTACACACATCCCCTTGGAGAGCTGACTGCAGCAGGGCTTCACTCAC
TCGACTGCGCCGCCAAGCCTATGCTCGCCTCTACCCTGTGCTCTTGGTCAAGCAGGACGGCTCCACTATC
CATATCCGATACCGGGAGCCACGACGCATGCTGGCGATGCCCCTAGACCTGGATGCCCTGTCTCCAGAAG
AGCGCAGGGCCCGGTTCCGAAAACGGGAGGCTCAGCTCCAGCAGAAGAGGGAAGAAGAGCCAGAGGTAGT
GGACAGTTTTGACACTGAACGATATAAACAGTTTTGGACCAAGACCAAGAAATAA

Translation (134 aa):
MPLAILLSACTSVRSLLRHCGVRAALPTPRHLHTSPWRADCSRASLTRLRRQAYARLYPVLLVKQDGSTI
HIRYREPRRMLAMPLDLDALSPEERRARFRKREAQLQQKREEEPEVVDSFDTERYKQFWTKTKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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