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Report for CCDS80110.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80110.1 Public Mus musculus 4 Rgs3 23 108 98 CCDS HistoryNCBI Gene:50780Re-query CCDS DB by CCDS ID:80110.1Re-query CCDS DB by GeneID:50780See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80110.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107420.7 ENSMUSP00000103043.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107420.7Link to Ensembl Protein Viewer:ENSMUSP00000103043.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107420Re-query CCDS DB by Protein ID:ENSMUSP00000103043
Original member NCBI NM_001310706.1 NP_001297635.1 Updated not alive Link to Nucleotide Sequence:NM_001310706.1Link to Protein Sequence:NP_001297635.1Re-query CCDS DB by Nucleotide ID:NM_001310706Re-query CCDS DB by Protein ID:NP_001297635
Current member NCBI NM_001310706.2 NP_001297635.1 Accepted alive Link to Nucleotide Sequence:NM_001310706.2Link to Protein Sequence:NP_001297635.1Re-query CCDS DB by Nucleotide ID:NM_001310706Re-query CCDS DB by Protein ID:NP_001297635Link to BLAST:NP_001297635.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297635.1 568 Q9DC04-1 568 100% 0 0

Chromosomal Locations for CCDS 80110.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 62689499 62690626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62697271 62697332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62699998 62700099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62700354 62700415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62701034 62701200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62702060 62702245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1707 nt):
ATGTTTGAGACAGAGGCAGATGAGAAGGAGATGCCCCTGGTCGAGGGGAAGGGGCCAGGTGCTGAGGAAC
CCGCACCCAGCAAAAATCCCTCTCCTGGCCAGGAGCTTCCTCCAGGACAAGACCTCCCTCCCAGCAAAGA
CCCCTCTCCCAGCCAGGAGCTTCCTGCAGGACAAGATCTCCCTCCCAGCAAAGACCCCTCTCCCAGCCAG
GAGCTTCCTGCAGGACAAGATCTCCCTCCCAGCAAAGACCCCTCTCCCAGCCAGGAGCTTCCTGTAGGAC
AAGACCTCCCACCCAGGAAGGACTCCTCAGGCCAAGAAGCTGCTCCTGGCCCAGAATCACCATCCAGTGA
AGACATAGCAACCTGCCCTAAGCCCCCTCAAAGCCCAGAAACCTCAACAAGCAAGGACTCCCCACCAGGC
CAGGGATCCTCCCCGACCACAGAACTCCCATCTTGCCAGGGCCTTCCTGCTGGTCAAGAATCTACTAGCC
AGGACCCTCTGCTCAGTCAAGAGCCCCCTGTTATCCCAGAATCCTCTGCCTCCGTCCAGAAACGCCTACC
CTCTCAGGAGTCACCCTCCAGCCTGGGCTCCCTGCCAGAGAAGGACCTTGCTGAGCAGACCATCAGCTCC
GGGGAGCCACCAGTCGCCACTGGTGCTGTACTGCCAGCCTCTAGACCTAACTTTGTGATCCCCGAGGTGC
GTCTGGATAATGCCTACAGCCAACTGGATGGGGCCCACGGAGGCAGCTCTGGCGAGGACGAGGATGCAGA
AGAGGGAGAGGAGGGGGGAGAAGGGGAGGAAGATGAGGAGGACGACACCAGCGACGACAACTACGGGGAT
CGTAGTGAGGCCAAGCGCAGCAGCCTGATTGAGACTGGCCAAGGCGCCGAGGGCGGCTTCTCGTTGCGTG
TGCAGAACTCGCTGCGGCGCCGGACGCACAGCGAGGGCAGCCTGCTGCAGGAGTCCCGGGGGCCCTGCTT
TGCCTCTGACACCACCTTACACTGCTCTGATGGCGAGGGCGCCACATCCACCTGGGCTATCCCTTCACCC
CGCACCCTCAAAAAAGAACTGGGTCGTAATGGAGGCTCCATGCACCACCTTTCCCTGTTCTTCACGGGAC
ACAGGAAGATGAGTGGGACTGACCTCACAGAATGTGATGAAGCTTCCCGGAAGAGAAAGAGCAAAAACAT
AGCCAAGGACATGAAGAATAAGCTGGCCATCTTCAGGCGGCGGAACGAATCTCCCGGGGCTCAGCCAGCC
AGCAAGACAGACAAGACAACCAAGTCCTTCAAGCCTACCTCGGAGGAAGCCCTCAAGTGGAGCGAGTCCC
TGGAAAAGTTGCTGCTTCATAAATATGGCTTAGAAGTGTTCCAGGCCTTCCTTCGCACCGAGTTCAGTGA
GGAGAACCTGGAGTTTTGGCTCGCTTGCGAGGACTTCAAGAAGGTCAAATCACAGTCCAAGATGGCAGCC
AAAGCCAAGAAGATCTTTGCTGAATTCATCGCAATCCAGGCTTGCAAAGAGGTAAACCTGGACTCCTACA
CACGAGAACACACCAAGGAGAATCTGCAGAGCATCACCCGAGGCTGCTTTGACTTGGCACAGAAACGTAT
CTTTGGGCTCATGGAGAAGGACTCTTACCCTCGCTTCCTCCGCTCTGACCTCTACCTGGACCTCATTAAC
CAGAAGAAGATGAGTCCCCCGCTCTAG

Translation (568 aa):
MFETEADEKEMPLVEGKGPGAEEPAPSKNPSPGQELPPGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQ
ELPAGQDLPPSKDPSPSQELPVGQDLPPRKDSSGQEAAPGPESPSSEDIATCPKPPQSPETSTSKDSPPG
QGSSPTTELPSCQGLPAGQESTSQDPLLSQEPPVIPESSASVQKRLPSQESPSSLGSLPEKDLAEQTISS
GEPPVATGAVLPASRPNFVIPEVRLDNAYSQLDGAHGGSSGEDEDAEEGEEGGEGEEDEEDDTSDDNYGD
RSEAKRSSLIETGQGAEGGFSLRVQNSLRRRTHSEGSLLQESRGPCFASDTTLHCSDGEGATSTWAIPSP
RTLKKELGRNGGSMHHLSLFFTGHRKMSGTDLTECDEASRKRKSKNIAKDMKNKLAIFRRRNESPGAQPA
SKTDKTTKSFKPTSEEALKWSESLEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAA
KAKKIFAEFIAIQACKEVNLDSYTREHTKENLQSITRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLIN
QKKMSPPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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