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Report for CCDS80884.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80884.1 Public Mus musculus 8 Marchf1 23 108 98 CCDS HistoryNCBI Gene:72925Re-query CCDS DB by CCDS ID:80884.1Re-query CCDS DB by GeneID:72925See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80884.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110258.7 ENSMUSP00000105887.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110258.7Link to Ensembl Protein Viewer:ENSMUSP00000105887.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110258Re-query CCDS DB by Protein ID:ENSMUSP00000105887
Original member Current member EBI ENSMUST00000178982.7 ENSMUSP00000136545.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178982.7Link to Ensembl Protein Viewer:ENSMUSP00000136545.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178982Re-query CCDS DB by Protein ID:ENSMUSP00000136545
Original member NCBI NM_001293784.1 NP_001280713.1 Updated not alive Link to Nucleotide Sequence:NM_001293784.1Link to Protein Sequence:NP_001280713.1Re-query CCDS DB by Nucleotide ID:NM_001293784Re-query CCDS DB by Protein ID:NP_001280713
Current member NCBI NM_001293784.2 NP_001280713.1 Accepted alive Link to Nucleotide Sequence:NM_001293784.2Link to Protein Sequence:NP_001280713.1Re-query CCDS DB by Nucleotide ID:NM_001293784Re-query CCDS DB by Protein ID:NP_001280713Link to BLAST:NP_001280713.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001280713.1 289 Q6NZQ8-1 289 100% 0 0

Chromosomal Locations for CCDS 80884.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 66121789 66121899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66276662 66276712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66386440 66386519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66418816 66418996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66456053 66456200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66468232 66468530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGCTGGGCTGGTGTGAAGCGATAGCCCGTAACCCTCACAGAATCCCAAACACCACGCGGACACCAGAGA
CCTCAGGGGATGTGGCCGATGCCTCTCAAACCTCCACGCTGAATGAAAAGTCCCCAGGGCGATCTGCAAG
TCGATCAAGTAACATATCAAAAGCAAGCAGCCCAACGACAGGGACAGCTCCCAGGAGCCAGTCAAGGTTG
TCTGTCTGTCCATCTACTCAGGACATCTGCAGGATCTGTCACTGCGAAGGAGATGAAGAGAGCCCACTCA
TCACACCCTGTCGCTGCACAGGAACCTTGCGCTTTGTCCACCAGTCCTGCCTCCACCAATGGATCAAGAG
CTCAGACACACGATGCTGTGAGCTCTGCAAGTATGACTTCATAATGGAGACCAAGCTCAAGCCCCTTCGG
AAGTGGGAAAAGCTCCAGATGACCACGAGCGAAAGGAGGAAAATATTCTGCTCTGTCACGTTCCACGTCA
TCGCCGTCACCTGTGTGGTGTGGTCCTTGTATGTGTTGATAGATCGGACAGCGGAGGAAATCAAGCAAGG
TAACGACAATGGTGTGCTGGAATGGCCATTTTGGACAAAACTGGTTGTGGTGGCTATTGGCTTCACGGGA
GGTCTCGTCTTCATGTATGTACAGTGTAAAGTCTACGTCCAACTGTGGCGCCGGCTGAAGGCCTACAACC
GTGTGATCTTTGTGCAGAATTGCCCAGACACTGCCAACAAACTGGAGAAGAACTTCCCGTGTAATGTGAA
CACGGAAATCAAGGATGCTGTGGTTGTGCCTGTGCCACAGACAGGTTCAAATACACTGCCAACTGCAGAG
GGAGCCCCACCTGAGGTTATACCAGTCTGA

Translation (289 aa):
MLGWCEAIARNPHRIPNTTRTPETSGDVADASQTSTLNEKSPGRSASRSSNISKASSPTTGTAPRSQSRL
SVCPSTQDICRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELCKYDFIMETKLKPLR
KWEKLQMTTSERRKIFCSVTFHVIAVTCVVWSLYVLIDRTAEEIKQGNDNGVLEWPFWTKLVVVAIGFTG
GLVFMYVQCKVYVQLWRRLKAYNRVIFVQNCPDTANKLEKNFPCNVNTEIKDAVVVPVPQTGSNTLPTAE
GAPPEVIPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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