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Report for CCDS81083.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
81083.1 |
Public |
Mus musculus |
9 |
Map4 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:17758](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:81083.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:17758](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 9 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 81083.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000199498.4 |
ENSMUSP00000142439.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000199498.4](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000142439.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000199498](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000142439](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_001311164.1 |
NP_001298093.1 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_001311164.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001298093.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001311164](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001298093](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001311164.2 |
NP_001298093.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001311164.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001298093.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001311164](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001298093](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001298093.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001298093.1 |
902 |
P27546-4 |
902 |
99.8891% |
0 |
1 |
Chromosomal Locations for CCDS 81083.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2709 nt): ATGTCGCTTCCAGAGAAGCAGCCAGCCGCGCTCACTGCTGCTCTCGCTGCCGAGGACGAGCAGCTCTCTA AAGGCAACCCTCCAGAGTGCGGGATGGACTCCCGGAAAGAAATCGGTCAGGATGGATTTGAATGGCAGAG GACAGAGGGTAAACTGAATGAAATCGGGCTGAATGTCAGCATGGATGGACAGCTGAAAGACAGGCTTGTG AAGAATTCCAGCTTCCTGGAACAGAATAAGCTCGGCTTTTTTGAGGGGAAGCTAGACAAAGAACTTAGCA TCGAAAAGCCTAACAAGGCGTATCAAGAAACCTCCGGTCACCTTGAGAGCGGGTATGTGATTTCAGGAAC CTGCCAGCCCTCGGAGGGGAACTTAGTTCACCAGAAGGCAGCAGAGTTCCACCCGGGACTCACCGAGGGG AAAGACAAAGCAGCTACAGTTCAGGGGAAGGTGGCTGGGAAGAGTGGACTAGAGATCAAGAGCCAGCCAG ATCTAAATTTTCCCGGGGCTGCTGACACTCTCACTCAACATGGTGAGGAACAAGAAACCAGTGCTTGGAA CGCCAACTTTTACTCAGTAACTCAGAGCCCTCAGGCTGCAACTCCAGGAAAAGAGAAGAATGGCCTCGTC TCCAGCTGCTCTGTGACTGGGGTGATGAGTGATAACTCTGGGCAGCTTAATAATAAGTCCCCATTACTGG TGGCTATCACCCACCCAGACCCAACTAGTGAGCATTTGCCCACCACTAGTCCACCAATCACTATGGTGGA ATTCACTCAGGAAAATTTGAATGCAGGCCAGGATAAAGAGTTGGAGAAATTAAGGTCTTCTGAGGAGGGG CCTATGCTTGACCAAGTACCCCAGCAGAAAAAGGCAATCCGAAGAGCCCTGTCTGAGTGTTACCATCTCT CAGTGCCCCCAGCTGTGAATCTTGTCGATAAGTACCCTGAGCTGCCTGCCCGAGAGGAGCTTCCTTCTGA CCTGCTGCCTCCCACCAGTAGCCCAATGCCAAGCCCTATGCCCAGGAAGCTGGGGGTGCCTGCCATGAGG CGCTCCATGACTGTGGCTGAGGACCAGTCAGCTAGCTGCAGATTGAGTGCTGGGGAACTGGCCAGCCTGT CTGCTTCTCAGGTACCAACTGCTTTAACCTTCGAGGAACCAGTGGCCAAGGAGAGAGAAGAACAGATCCA CTTCAGCAATGATAGCAACAGCTCTGGGAAGAAGGAACTGGGCATCGCTGGGCTGTATCTCCACAGTAAG CTGGAACAGATTCCCGAAGGAAGCCACAAGGGAAAGGGGCAGGAAAATACTGGTGAGACAAGAGTTGATT CATGTCCCTTCATCTGCCTGGGAGGCGAGAAACAGCTGATGGCACTGGCAGGGAAGAAAGAAATTGAGGT CACTGCAACCCAGAGCATTCCATCATTGCTGTTGGAAGAGACCCCACGTGATGGAGTATCCCGGCAAGAA GAAGCAAAGGCTGCTGTAGGTGTGACTGGAAATGACATCACTACCCCGCCAAACAAGGAGCCACCACCAA GCCCAGAAAAGAAAGCAAAGCCTTTGGCCACCACTCAACCTGCAAAGACTTCAACATCGAAAGCCAAAAC ACAGCCCACTTCTCTCCCTAAGCAACCAGCTCCCACCACCTCTGGTGGGTTGAATAAAAAACCCATGAGC CTCGCCTCAGGCTCAGTGCCAGCTGCCCCACACAAACGCCCTGCTGCTGCCACTGCTACTGCCAGGCCTT CCACCCTACCTGCCAGAGACGTGAAGCCAAAGCCAATTACAGAAGCTAAGGTTGCCGAAAAGCGGACCTC TCCATCCAAGCCTTCATCTGCCCCAGCCCTCAAACCTGGACCTAAAACCACCCCAACCGTTTCAAAAGCC ACATCTCCCTCAACTCTTGTTTCCACTGGACCAAGTAGTAGAAGTCCAGCTACAACTCTGCCTAAGAGGC CAACCAGCATCAAGACTGAGGGGAAACCTGCTGATGTCAAAAGGATGACTGCTAAGTCTGCCTCAGCTGA CTTGAGTCGCTCAAAGACCACCTCTGCCAGTTCTGTGAAGAGAAACACCACTCCCACTGGGGCAGCACCC CCAGCAGGGATGACTTCCACTCGAGTCAAGCCCATGTCTGCACCTAGCCGCTCTTCTGGGGCTCTTTCTG TGGACAAGAAGCCCACTTCCACTAAGCCTAGCTCCTCTGCTCCCAGGGTGAGCCGCCTGGCCACAACTGT TTCTGCCCCTGACCTGAAGAGTGTTCGCTCCAAGGTCGGCTCTACAGAAAACATCAAACACCAGCCTGGA GGAGGCCGGGTTCAGATTCAGAACAAGAAAGTGGACATATCCAAGGTCTCCTCCAAGTGTGGGTCCAAAG CTAATATCAAGCACAAGCCTGGTGGAGGAGATGTCAAGATTGAAAGTCAGAAGTTGAACTTCAAGGAGAA GGCCCAAGCCAAAGTGGGATCCCTTGATAACGTGGGCCACTTGCCTGCAGGAGGTGCCGTGAAGACTGAG GGCGGTGGCAGTGAGGCCCTTCCGTGTCCAGGCCCCCCCGCTGGGGAGGAGCCAGTCATCCCTGAGGCTG CGCCTGACGCTGGCGCCCCTACTTCAGCCAGTGGCCTCAGTGGCCACACCACCCTGTCAGGGGGTGGTGA CCAAAGGGAGCCCCAGACCTTGGACAGCCAGATCCAGGAGACAAATTGA
Translation (902 aa): MSLPEKQPAALTAALAAEDEQLSKGNPPECGMDSRKEIGQDGFEWQRTEGKLNEIGLNVSMDGQLKDRLV KNSSFLEQNKLGFFEGKLDKELSIEKPNKAYQETSGHLESGYVISGTCQPSEGNLVHQKAAEFHPGLTEG KDKAATVQGKVAGKSGLEIKSQPDLNFPGAADTLTQHGEEQETSAWNANFYSVTQSPQAATPGKEKNGLV SSCSVTGVMSDNSGQLNNKSPLLVAITHPDPTSEHLPTTSPPITMVEFTQENLNAGQDKELEKLRSSEEG PMLDQVPQQKKAIRRALSECYHLSVPPAVNLVDKYPELPAREELPSDLLPPTSSPMPSPMPRKLGVPAMR RSMTVAEDQSASCRLSAGELASLSASQVPTALTFEEPVAKEREEQIHFSNDSNSSGKKELGIAGLYLHSK LEQIPEGSHKGKGQENTGETRVDSCPFICLGGEKQLMALAGKKEIEVTATQSIPSLLLEETPRDGVSRQE EAKAAVGVTGNDITTPPNKEPPPSPEKKAKPLATTQPAKTSTSKAKTQPTSLPKQPAPTTSGGLNKKPMS LASGSVPAAPHKRPAAATATARPSTLPARDVKPKPITEAKVAEKRTSPSKPSSAPALKPGPKTTPTVSKA TSPSTLVSTGPSSRSPATTLPKRPTSIKTEGKPADVKRMTAKSASADLSRSKTTSASSVKRNTTPTGAAP PAGMTSTRVKPMSAPSRSSGALSVDKKPTSTKPSSSAPRVSRLATTVSAPDLKSVRSKVGSTENIKHQPG GGRVQIQNKKVDISKVSSKCGSKANIKHKPGGGDVKIESQKLNFKEKAQAKVGSLDNVGHLPAGGAVKTE GGGSEALPCPGPPAGEEPVIPEAAPDAGAPTSASGLSGHTTLSGGGDQREPQTLDSQIQETN
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