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Report for CCDS84047.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84047.1 Public Mus musculus 13 Ccnh 23 108 98 CCDS HistoryNCBI Gene:66671Re-query CCDS DB by CCDS ID:84047.1Re-query CCDS DB by GeneID:66671See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84047.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163600.7 ENSMUSP00000129349.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163600.7Link to Ensembl Protein Viewer:ENSMUSP00000129349.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163600Re-query CCDS DB by Protein ID:ENSMUSP00000129349
Original member Current member NCBI NM_001347587.1 NP_001334516.1 Accepted alive Link to Nucleotide Sequence:NM_001347587.1Link to Protein Sequence:NP_001334516.1Re-query CCDS DB by Nucleotide ID:NM_001347587Re-query CCDS DB by Protein ID:NP_001334516Link to BLAST:NP_001334516.1

Chromosomal Locations for CCDS 84047.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 85189536 85189652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85190754 85190876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85196252 85196325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85197351 85197561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85202441 85202496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85206128 85206198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85208778 85208889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85211854 85211914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85212740 85212778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (864 nt):
ATGTATCACAGCAGCAGCCAGAAACGGCACTGGACCTTCGCTAGCGAGGAGCAGCTGGCGCGCCTGCGGG
CGGACGCCAACCGCAAATTCAAGTGCAAAGCTGTGGCTAACGGGAAGGTTCTTCCAAATGATCCAGTGTT
TCTGGAGCCTCATGAAGAATTGACACTTTGCAAGTACTATGAAAAAAGATTATTGGAATTCTGTTCAGTG
TTTAAACCAGCTATGCCACGGTCTGTTGTGGGTACAGCTTGTATGTATTTCAAGCGTTTTTATCTTAATA
ACTCAGTAATGGAATATCACCCTCGGATAATAATGCTTACTTGTGCATTTTTGGCCTGCAAAGTAGATGA
ATTCAATGTGTCTAGTCCCCAGTTTGTTGGAAATCTTCGAGAGAGTCCTCTTGGACAGGAGAGGGCACTG
GAACAGATTTTGGAATATGAACTACTACTTATACAACAACTTAATTTTCACCTTATTGTCCACAATCCAT
ACAGACCATTTGAAGGCTTCCTCATCGATATAAAGATTGCCCTGACCGCCATTTTATCAAGTGCCTCTAG
AGCTGGAATTACTATGGAAAGCTACTTATCAGAGAGTCTAATGCTAAAAGAAAACAGAACTTGCCTGTCA
CAGTTACTGGATATAATGAAAAGCATGAGAAATCTAGTAAAAAAGTACGAGCCGCCCAGGTCTGACGAGG
TTGCTGTCCTGAAACAGAAGCTGGAGCGGTGTCATTCTTCTGACCTTGCACTTAATGCGGTTACGAAGAA
GAGGAAAGGCTATGAAGATGATGACTATGTGTCAAAGAAACCCAAACAGGAAGAGGAGGAATGGACTGAT
GACGACCTGGTAGATTCTCTCTAA

Translation (287 aa):
MYHSSSQKRHWTFASEEQLARLRADANRKFKCKAVANGKVLPNDPVFLEPHEELTLCKYYEKRLLEFCSV
FKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQERAL
EQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDIKIALTAILSSASRAGITMESYLSESLMLKENRTCLS
QLLDIMKSMRNLVKKYEPPRSDEVAVLKQKLERCHSSDLALNAVTKKRKGYEDDDYVSKKPKQEEEEWTD
DDLVDSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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