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Report for CCDS84108.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84108.1 Public Mus musculus 14 Sh3bp5 23 108 98 CCDS HistoryNCBI Gene:24056Re-query CCDS DB by CCDS ID:84108.1Re-query CCDS DB by GeneID:24056See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84108.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100730.9 ENSMUSP00000098296.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100730.9Link to Ensembl Protein Viewer:ENSMUSP00000098296.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100730Re-query CCDS DB by Protein ID:ENSMUSP00000098296
Original member NCBI NM_001347585.1 NP_001334514.1 Updated not alive Link to Nucleotide Sequence:NM_001347585.1Link to Protein Sequence:NP_001334514.1Re-query CCDS DB by Nucleotide ID:NM_001347585Re-query CCDS DB by Protein ID:NP_001334514
Current member NCBI NM_001347585.2 NP_001334514.1 Accepted alive Link to Nucleotide Sequence:NM_001347585.2Link to Protein Sequence:NP_001334514.1Re-query CCDS DB by Nucleotide ID:NM_001347585Re-query CCDS DB by Protein ID:NP_001334514Link to BLAST:NP_001334514.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334514.1 456 Q9Z131-3 456 100% 0 0

Chromosomal Locations for CCDS 84108.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 31374984 31375201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31375604 31375864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31377391 31377610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31378278 31378320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31379389 31379519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31387719 31387883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31411541 31411669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31417411 31417614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGGACTGGGCCAGAACTGTTATGGCCTCTACAGGGCTGGCCCCAGCTTCTGCTGCTCCTCACACCGGCT
CCCGTGCCCAGCCCTGCCTCTTTTTGGCTCCTGTGCCCCCACACTTTGCTTGGTTTATCTTCCTGGACCC
TGCTCTACCCTGCTCTACTCTGGCACAGTCGGTCAGCTTCAAACCCTGCTGTGGGGTCGTAAAGGATGCA
CGCCAGAAGTTCCGATCTGTCCTGGTCGAGGCAACGGTGAAACTAGACGAACTGGCAAAGAAAATCGGCA
AAGCCGTGGAGGACTCGAAGCCCTACTGGGAGGCCCGGAGGGTGGCAAGGCAGGCTCAGCTGGAGGCGCA
GAAGGCCACACAGGACTTCCAGAGGGCCACCGAGGTACTCCGTGCAGCCAAGGAAACAATCTCTCTGGCT
GAGCAGCGGCTGTTGGAGGATGACAAGCGGCAGTTTGACTCTGCTTGGCAGGAAATGCTGAACCATGCTA
CTCAGAGGGTCATGGAGGCCGAGCAGACCAAGACAAGGAGTGAGCTAGTACACAAGGAGACGGCAGCCAG
GTACAACGCTGCCATGGGTCGCATGCGCCAGCTGGAGAAGAAACTCAAGCGAGCCATCAACAAGTCCAAG
CCTTATTTTGAGCTAAAGGCAAAGTACTACGTGCAGCTTGAGCAACTGAAGAAGACGGTGGATGACCTTC
AGGCCAAGCTGGCCCTGGCAAAGGGCGAGTACAAGGCAGCCCTGAAGAGCCTGGAGAGGATCTCAGATGA
GATACACGAGCGGCGGCGTTCCAATGCCATGGGGCCCCGGGGCTGTGGCGTGGGGGCAGAGGGCAGCATC
GCCTCAGTGGAGAACCTGCCTGTAAGCAAACCTGAGCCTGACGCCATTTCTGTGGCATCAGAAGCCTTTG
AAGATGACAACTGCAGCAACTTGGTGTCTGAAGATGACTCGGAAACCCAGTCTGTGTCCAGCTTTAGTTC
GGGACCGACGAGTCCGTCTGAAATGCCTGATCAGTTCCCTGCAGTGGCAAGGCCTGGCAGTCTGGATCTG
CCTAGCCCTGTGTCCCTGTCAGAATTTGGGATGATGTTCCCAATACTGGGTCCTCGAAGTGAATGCAGTG
GGGCCTCCTCCCCTGAATGTGAGGTTGAACGAGGAGACAGAGCAGAAGGGGCCGAGAATAAAATGAGTGA
CAAAGCCAACAACAACCGTGTTCTCGGCAGCACCAACGGTGGCAGTGGCAGGAGCAGGAGCCAAAGCAGC
ACGTCCCTTGAGAGCCAGGCCTTGGAAACCCGGATGAAGCAGCTCTCCCTACAGTGCTCAAAAGGAAGAG
ATGGAATTATTGCTGACATAAAAATGGTGCAGATTGGCTGA

Translation (456 aa):
MDWARTVMASTGLAPASAAPHTGSRAQPCLFLAPVPPHFAWFIFLDPALPCSTLAQSVSFKPCCGVVKDA
RQKFRSVLVEATVKLDELAKKIGKAVEDSKPYWEARRVARQAQLEAQKATQDFQRATEVLRAAKETISLA
EQRLLEDDKRQFDSAWQEMLNHATQRVMEAEQTKTRSELVHKETAARYNAAMGRMRQLEKKLKRAINKSK
PYFELKAKYYVQLEQLKKTVDDLQAKLALAKGEYKAALKSLERISDEIHERRRSNAMGPRGCGVGAEGSI
ASVENLPVSKPEPDAISVASEAFEDDNCSNLVSEDDSETQSVSSFSSGPTSPSEMPDQFPAVARPGSLDL
PSPVSLSEFGMMFPILGPRSECSGASSPECEVERGDRAEGAENKMSDKANNNRVLGSTNGGSGRSRSQSS
TSLESQALETRMKQLSLQCSKGRDGIIADIKMVQIG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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