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Report for CCDS84352.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84352.1 Public Mus musculus 18 Svil 23 108 98 CCDS HistoryNCBI Gene:225115Re-query CCDS DB by CCDS ID:84352.1Re-query CCDS DB by GeneID:225115See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84352.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000143254.7 ENSMUSP00000119287.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000143254.7Link to Ensembl Protein Viewer:ENSMUSP00000119287.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000143254Re-query CCDS DB by Protein ID:ENSMUSP00000119287
Original member Current member NCBI NM_001347449.1 NP_001334378.1 Accepted alive Link to Nucleotide Sequence:NM_001347449.1Link to Protein Sequence:NP_001334378.1Re-query CCDS DB by Nucleotide ID:NM_001347449Re-query CCDS DB by Protein ID:NP_001334378Link to BLAST:NP_001334378.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334378.1 1766 Q8K4L3-3 1766 100% 0 0

Chromosomal Locations for CCDS 84352.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 5046639 5046646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5046764 5046915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5048885 5049494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5058125 5058159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5058713 5058774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5059230 5059369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5062162 5062405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5063194 5063770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5064471 5064690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5073881 5074004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5082783 5082930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5086535 5086624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5086710 5086796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5088637 5088814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5090787 5090959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5092845 5093000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5094538 5094674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5095172 5095319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5095436 5095581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5097427 5097602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5098908 5099052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5099434 5099710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5103575 5103726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5105766 5105871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5106664 5106871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5108575 5108708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5114531 5114686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5115978 5116121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5116973 5117097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5118100 5118255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5118346 5118432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5301 nt):
ATGAAAAGAAAAGAAAGAATTGCTAGGCGCTTAGAAGGAATAGAAAATGACTCCCAGCCCATCCTGTTGC
AGAGCTGCACAGGGCTAGTGACTCATCGGCTGCTAGAAGAAGACACACCCAGATACATGCGTGCCACAGA
CCCTGCAAGCCCTCATATTGGGCGATCCAAAGAAGAGGAAGACACTCCTGGGTCCTCCCTAGAAAAGCAA
ACTCCTTCTAAATACTGCATAGAAACCTCAGGCATCCATAGTTCGGGCTCCATGGACACCCACAGTCTGG
AGTCCAAAGCGGAAAGGATCGCAAGATACAAAGCAGAGAGGAGGCGGCAGCTGGCCGAAAAGTACGGGCT
GACCTTGGACCCAGAAGCTGACTCTGAATACTTGTCTCGATATGCCAAGTCTCGGAAGGACCCAGATGTG
ACTGAGAGACGAGGAAAAAGTGACAAGCAAGAAGAACAGAGCAAGGATGCCAATTCCCGGCACTCCAGGA
CAGAGTCAGGGCCCAGGACCAGCTTGGTGGCGTCCCAGGACTGTACCCCGCTGGGAAGCAATATGTCTGA
CCAGGAGCAGCTGCTCAATGTGGAGAACCAGAGAAGAGTCCAAGATCCCCCACTAGGAGAAGATGGCTCC
TCTGCCTTCTTTTCTGAGCGAAGCATTTCCTTCCCCGAAGTGCCCAGGTCTCCAAAGCAGATACCCAGCT
CACCACTGCAACAGCCAGCCTCCCCAAACCACCCCGGTGACTCACCACTGCCCACAGAGGCCCGAGCCAG
GTACCCTTCTGGTTCAGAAATACCAGTGGTCGAGGATGAAGAAAAGGTGGATGAGCGGGCCAAGCTGAGC
GTGGCTGCCAAGAGGCTGCTTTTCAGGGAAATGGAGAAATCCTTTGATGAACACACTGTCCCAAAGAGAC
ATTCGAGAAATGCAGCTGTGGAGCAGAGGCTGCGTCGCCTGCAGGACCGTTCACACACACAGCCCATCAC
CACGGAGGAAGTGGTCATTGCAGCTACGTTACAAGCATCTGCTCACCAAAAGGCTTTAGCCAGGGACCAG
GCAAATGAGGGCAGAGAGTCTGCCGAACCAGGCGAACCTGATTCCTCCACTCTGAGCTTAGCAGAGAAAT
TGGCCTTGTTTAACAAATTGTCCCAGCCAGTCTCCAAAGCCATTTCCACCCGAAACAGAATAGATGTGCG
GCAGAGGAGGATGAACGCAAGGTACCAGACGCAGCCGGTCACTCTTGGAGAAGTGGAGCAGGTGCAGAGT
GGGAAACTCATCTCCTTCTCCCCCACTGTGAACACCTCTGTTTCTATTATGGCCTCTGCGGTTGCTCCCA
CATATGCAGGGGACCTTCGGAAGCTATCTGTTGACAACAACACAAGTGCCACTGACTATAAGTCTCCTCC
TGCGGAAAACTCAGACTCTCCAGTCAGAAGCATTCTGAAACCACAAGCTTGGCGGCCTTTGGTAGAGCAC
AGTGGGAGCAAAGGAATGCCGGGGGAGTCTGGAAAGACAGAAAGCAAGAATGCTCTGACTGTGGCTGCAG
AAGACAGTGGCGTTCAAACACGAGGAGCCTTCGAGGAGGAAGAGGAGCCCTCCTACCCCATCCTTGGCAG
AGTCAGGGAGGGTGATGGCCAGAAGGAGCCTAAGCATGTCGTCCTAAGGAGGGGAAGCTTAGAGCTAGGC
AATCCTTCTGCTGCACACCTTGGTGATGAGCTGAAGGAAGTTTCCACTGCTAAAAGCAGTTTGCAAGAGA
ATCTAGACCTGAAGGATAAGCAGGCCTCAGAGGAGAACACAGATGTGGAAACTGTCATGAGGAAGTTCTC
ACTGAAAGAGTTTGGAGAAACGACTTCTGAGCAGACAGAGGTGGCTGCCAGGAAGGCCTCGGTTCAGATG
GCGACCCCAGGGGCCTGGAAGCAGCAGGAGTCCTCTGAGCAACTAGCAGAGAAGCTCTTCAAGAACCCTT
GTGCCATGTTTGCTTCTGGAGAGGTCAAGGTGCCAGTAGGCGACAGTTTCCTGGATTCACCCAGCAAAAC
CATGTCAATCAAAGAAAGGCTGGCACTGTTAAAGAAGAGTGGCGAGGAAGACTGGAAGAACAGGCTGATT
CGGAAGCAGGAATATGGCAAAGCCACTGGCGGCCTGCACACGCAGGAGGTGGAGCAGTCCCTGAAGAAAA
AGAGAGTCACAGAAAGTCGAGAGAGCCAGATGACGATTGAAGAGAGGAAGCACCTCATCACTGTGCGCGA
GGAAGCGTGGAAGACGAAGGGCAGAGGCGCTGCCAATGACTCCACACAGTTCACCGTGGCAGGAAGAATG
GTGAAGAAAGGTCTGGCATCACCCACATCCATAACTCCCATCTCATCCCCTCTCTGCAGTAAATCAAGGG
GCACTACCCCGGTTTCCAAACCCTTGGAAGATATTGAAGCCAGACCAGATATGCAGCTGGAATCAGACCT
GAAGTTGGACAGACTGGAAACCTTCCTAAGGAGGCTAAATAACAAGGTTGCTGGGATACAGGAAACGGTT
CTCACGGTCACTGGCAAATCTGTCAAGGAGGTGATGAAGTTGGATGATGATGAAACATTTGCCAAATTCT
ACCGCAGCGTGGATCACAGTATACCCAGAAGTCCTGTGGAGCTGGAGGAGGACTTCGATGTCATTTTCGA
CCCTTATGCTCCCAAGTTGACATCTTCTGTGGCAGAGCATAAGCGCCAGGTCAGGCCCAAGCGCCGGGTC
CAGGCTTCCAAGAACCCTCTCAAGCTGCTGGCAGCAAGAGACGACCTCCTTCAGGAATACACAGAGCAAA
GGCTAAATGTGGCCTTCATGGAGTCCAAGCGGATGAAAGTGGAAAAGATGTCATCCAACTCCAACTTCTC
AGAAGTGACTCTGGCAGGCCTGGCCAGTAGGGAGAACTTCAGCAACATCAACCTGAGGAGTGTCAATCTG
ATGGAGCAAAACTCCAACAACAGCGCGATGCCCTACAAGAAGCTCATGCTGTTGCAGATTAAAGGAAGAA
GACATGTGCAGACAAGGCTGGTGGAGCCCCGAGCCTCATCACTCAACAGTGGGGACTGCTTCCTTCTGCT
GTCTCCTCAGTACTGCTTCCTGTGGGTGGGAGAGTTCTCCAATGTCATCGAGAAAGCAAAGGCATCTGAA
CTTGCAACGTTAATTCAGACAAAGAGGGAGCTTGGTTGTAGAGCTACATACATCCAGACCATCGAAGAAG
GAATTAACACACATACTCACGCAGCCAAAGACTTCTGGAAGCTCTTGGGTGGCCAGACCAGTTACCAGTC
TGCCGGAGACCCAAAGGAAGATGAGCTGTACGAGACAGCCATCATAGAGACGAACTGTGTCTACCGCCTG
ACAGATGACAAACTCGTTCCTGATGATGACTACTGGGGGAAGATTCCCAAGTGTTCCCTTCTGCAGTCCA
AAGAGGTCCTGGTGTTTGACTTTGGTAGTGAAGTTTACGTGTGGCATGGGAAGGAAGTCACGTTAGCACA
ACGGAAAATAGCATTCCAGCTGGCTAAGCACTTATGGAACGGAACCTTTGACTATGAGAACTGTGACATC
AACCCCCTGGACCCCGGAGAGTGCAACCCGCTCATTCCCAGGAAAGGACAAGGACGGCCTGACTGGGCAA
TATTTGGAAGAGTTACGGAGCACAATGAGACTATTCTGTTCAAAGAGAAATTCCTTGACTGGACAGAGCT
GAAGAGACCCACAGAGAAGAATTCTGGAGAAGTTGTCCAGCAGAAGGATGACCCGAGGGCCGACGTCAAG
CCTTATGATGTGACACGGATGGTGGCGACGCCCCAGATTACAGCTGGCACCATCTTAGATGGGGTGAACG
TTGGCCGTGGCTATGGCCTGGTGGAAGGAGATGACAGAAGACAGTTTGAGATTGCCACTGTCTCTGTGGA
TGTGTGGCACATTCTGGAATTTGACTACAGCAGGCTCCCCAGGCAGAGCATCGGGCAGTTCCACGAGGGG
GACGCCTATGTGGTCAAGTGGAAGTACATGGCAAGTACAGCAGTGGGAAGCCGACAAAAGGGAGAGCACC
TGGTGAGAGTGGCTGGCAAAGAGAAGTGTGTCTATTTCTTCTGGCAAGGCCGGCACTCGACCGTGAGTGA
GAAGGGAACGTCAGCTCTCATGACAGTAGAACTGGATGAAGAGAGGGGGGCCCAGGTCCAGGTCCTGCAG
GGAAAGGAGCCACCCTGCTTCCTTCAGTGTTTCCAAGGGGGTATGGTGGTGCACTCCGGACGGAGGGAAG
AGGAAGAAGAAAATGTGCAAAGTGAATGGAGACTGTATTGTGTGCGAGGAGAGGTGCCCATGGAAGGGAA
CTTGCTAGAAGTGGCCTGTCATTGCAGCAGTCTGAGGTCCAGGACTTCCATGGTCGTTCTGAATATAAAC
AAGGCCCTCATCTACTTGTGGCATGGATGCAAAGCTCAAGGTCATACGAAGGAGGTTGGAAGGACTGCAG
CAAATAAGATCAAGGAAGAATGTCCCCTGGAAGCAGGTTTGCACAGCAGCAGCAACGTGACAATACATGA
GTGTGACGAAGGATCCGAGCCCCTGGGATTCTGGGACGCTCTGGGGAGGAGGGACAGAAAGGCCTATGAC
TGCATGCTTCAAGATCCTGGAAGTTTTAACTTCGCGCCCCGCCTGTTCATCCTCAGCAGCTCCTCCGGAG
ACTTCTCTGCGACAGAGTTTGTGTACCCCGCACAAGCGCCCTCTGCCGTCAGCTCCATGCCTTTCCTGCA
GGAGGACCTGTACAGCGCGCCGCAGCCAGCTCTCTTCCTTGTTGACAACCATCACGAGGTGTACCTCTGG
CAAGGCTGGTGGCCCACTGAAAACAAGATAACCGGCTCTGCCCGCATTCGCTGGGCCTCAGACCGGAAGA
GTGCCATGGAGACGGTCCTGCAGTACTGCCGAGGAAAGAATCTCAAAAGGCCACCCCCCAAGTCTTACCT
TATTCATGCTGGGCTAGAGCCCCTGACATTCACCAACATGTTTCCCAGCTGGGAACACAGAGAAGACATT
GCTGAAATCACAGAAATGGATACTGAAGTTTCCAACCAGATCACCTTGGTGGAAGATGTATTAGCCAAGC
TCTGTAAAACCATCTATCCACTGGCAGATCTGCTTGCCAGGCCACTCCCAGAGGGGGTCGACCCTCTAAA
GCTTGAGATTTATCTCACAGATGAAGACTTTGAGTTTGCACTCGACATGTCCAGAGATGAATTCAATGCA
CTGCCCACCTGGAAGCAAGTGAACCTGAAGAAGTCAAAGGGCCTATTCTGA

Translation (1766 aa):
MKRKERIARRLEGIENDSQPILLQSCTGLVTHRLLEEDTPRYMRATDPASPHIGRSKEEEDTPGSSLEKQ
TPSKYCIETSGIHSSGSMDTHSLESKAERIARYKAERRRQLAEKYGLTLDPEADSEYLSRYAKSRKDPDV
TERRGKSDKQEEQSKDANSRHSRTESGPRTSLVASQDCTPLGSNMSDQEQLLNVENQRRVQDPPLGEDGS
SAFFSERSISFPEVPRSPKQIPSSPLQQPASPNHPGDSPLPTEARARYPSGSEIPVVEDEEKVDERAKLS
VAAKRLLFREMEKSFDEHTVPKRHSRNAAVEQRLRRLQDRSHTQPITTEEVVIAATLQASAHQKALARDQ
ANEGRESAEPGEPDSSTLSLAEKLALFNKLSQPVSKAISTRNRIDVRQRRMNARYQTQPVTLGEVEQVQS
GKLISFSPTVNTSVSIMASAVAPTYAGDLRKLSVDNNTSATDYKSPPAENSDSPVRSILKPQAWRPLVEH
SGSKGMPGESGKTESKNALTVAAEDSGVQTRGAFEEEEEPSYPILGRVREGDGQKEPKHVVLRRGSLELG
NPSAAHLGDELKEVSTAKSSLQENLDLKDKQASEENTDVETVMRKFSLKEFGETTSEQTEVAARKASVQM
ATPGAWKQQESSEQLAEKLFKNPCAMFASGEVKVPVGDSFLDSPSKTMSIKERLALLKKSGEEDWKNRLI
RKQEYGKATGGLHTQEVEQSLKKKRVTESRESQMTIEERKHLITVREEAWKTKGRGAANDSTQFTVAGRM
VKKGLASPTSITPISSPLCSKSRGTTPVSKPLEDIEARPDMQLESDLKLDRLETFLRRLNNKVAGIQETV
LTVTGKSVKEVMKLDDDETFAKFYRSVDHSIPRSPVELEEDFDVIFDPYAPKLTSSVAEHKRQVRPKRRV
QASKNPLKLLAARDDLLQEYTEQRLNVAFMESKRMKVEKMSSNSNFSEVTLAGLASRENFSNINLRSVNL
MEQNSNNSAMPYKKLMLLQIKGRRHVQTRLVEPRASSLNSGDCFLLLSPQYCFLWVGEFSNVIEKAKASE
LATLIQTKRELGCRATYIQTIEEGINTHTHAAKDFWKLLGGQTSYQSAGDPKEDELYETAIIETNCVYRL
TDDKLVPDDDYWGKIPKCSLLQSKEVLVFDFGSEVYVWHGKEVTLAQRKIAFQLAKHLWNGTFDYENCDI
NPLDPGECNPLIPRKGQGRPDWAIFGRVTEHNETILFKEKFLDWTELKRPTEKNSGEVVQQKDDPRADVK
PYDVTRMVATPQITAGTILDGVNVGRGYGLVEGDDRRQFEIATVSVDVWHILEFDYSRLPRQSIGQFHEG
DAYVVKWKYMASTAVGSRQKGEHLVRVAGKEKCVYFFWQGRHSTVSEKGTSALMTVELDEERGAQVQVLQ
GKEPPCFLQCFQGGMVVHSGRREEEEENVQSEWRLYCVRGEVPMEGNLLEVACHCSSLRSRTSMVVLNIN
KALIYLWHGCKAQGHTKEVGRTAANKIKEECPLEAGLHSSSNVTIHECDEGSEPLGFWDALGRRDRKAYD
CMLQDPGSFNFAPRLFILSSSSGDFSATEFVYPAQAPSAVSSMPFLQEDLYSAPQPALFLVDNHHEVYLW
QGWWPTENKITGSARIRWASDRKSAMETVLQYCRGKNLKRPPPKSYLIHAGLEPLTFTNMFPSWEHREDI
AEITEMDTEVSNQITLVEDVLAKLCKTIYPLADLLARPLPEGVDPLKLEIYLTDEDFEFALDMSRDEFNA
LPTWKQVNLKKSKGLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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