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Report for CCDS88689.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88689.1 Public Mus musculus 14 Fbxo16 23 108 98 CCDS HistoryNCBI Gene:50759Re-query CCDS DB by CCDS ID:88689.1Re-query CCDS DB by GeneID:50759See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88689.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000226005.1 ENSMUSP00000153094.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226005.1Link to Ensembl Protein Viewer:ENSMUSP00000153094.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226005Re-query CCDS DB by Protein ID:ENSMUSP00000153094
Original member Current member NCBI NM_001360383.1 NP_001347312.1 Accepted alive Link to Nucleotide Sequence:NM_001360383.1Link to Protein Sequence:NP_001347312.1Re-query CCDS DB by Nucleotide ID:NM_001360383Re-query CCDS DB by Protein ID:NP_001347312Link to BLAST:NP_001347312.1

Chromosomal Locations for CCDS 88689.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 65270737 65270835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65287132 65287167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65293784 65293990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65295393 65295557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65299186 65299415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65303100 65303202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65320105 65320134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGATGGCCTTTGCACCTCCAAAAAGCATCGATGGCCCCAAAATGCAGACAAAGATGAGTACCTGGACAC
CTCTCAACCATCAGCTTCTGAATGACCAGGTATTTGAAGAACGAAGAGCTCTGCTGGGAAAATGGTTTGA
CAAATGGACAGACTCTCAAAGGAGAAGAATTCTTACAGGCCTACTAGAGCGCTGTTCCCTGTCCCAGCAG
AAGTTCTGTTGTCGAAAGCTGCAGGAAAAAATCCCAGCAGAGGCCCTGGATTTTACTACCAAGCTTCCAA
GGGTGTTATCTGTCTACATCTTTTCCTTCCTGGATCCCCGGAGTCTTTGCCGTTGTGCACAGGTGAGCTG
GTACTGGAAGAGCTTGGCTGAGTTGGACCAGCTCTGGATGCTCAAGTGCCTGCGCTTCAACTGGTACATC
AGCTTCTCCCCAACGCCCTTTGAACAGGGCGTCTGGAAAAAGCACTACATCCAGATGGTGAGAGAACTTC
ACGTCACCAAGCCCAAGACACCTCCAAAGGATGAATTCACAACTGCCGATGTTCAGCCAATTCCTGGCAA
TTCTCCAGATGAGAAGCAGTCCCCTTCCTTAGCTTTTCGGTCCTCCTCCTCCTTAAGAAAGAAGAATAAC
CCCGGGGAGAAAGAGCTTCCACCTTGGCGATCGTCAGATAAGCATCCCACTGACATCATCCGCTTTAATT
ATCTAGACAACTGTGACCCTGAGCTCTTCAGGCTAGGAAGAAGAAAAAGAAGCGAAGTGACCCCAGACTT
CAAGCGCCAGCTGCGAGATAAGAAAAATAAGCTTCAAGACAGAGCCAGGCTCAGGAAAGCACAGTCATTG
CCATCAAGGAGAGACCTGTGGTCACTGTGA

Translation (289 aa):
MMAFAPPKSIDGPKMQTKMSTWTPLNHQLLNDQVFEERRALLGKWFDKWTDSQRRRILTGLLERCSLSQQ
KFCCRKLQEKIPAEALDFTTKLPRVLSVYIFSFLDPRSLCRCAQVSWYWKSLAELDQLWMLKCLRFNWYI
SFSPTPFEQGVWKKHYIQMVRELHVTKPKTPPKDEFTTADVQPIPGNSPDEKQSPSLAFRSSSSLRKKNN
PGEKELPPWRSSDKHPTDIIRFNYLDNCDPELFRLGRRKRSEVTPDFKRQLRDKKNKLQDRARLRKAQSL
PSRRDLWSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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