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Report for CCDS90433.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90433.1 Public Mus musculus 8 Neto2 23 108 98 CCDS HistoryNCBI Gene:74513Re-query CCDS DB by CCDS ID:90433.1Re-query CCDS DB by GeneID:74513See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90433.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000209479.1 ENSMUSP00000148172.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209479.1Link to Ensembl Protein Viewer:ENSMUSP00000148172.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209479Re-query CCDS DB by Protein ID:ENSMUSP00000148172
Original member Current member NCBI NM_001357287.1 NP_001344216.1 Accepted alive Link to Nucleotide Sequence:NM_001357287.1Link to Protein Sequence:NP_001344216.1Re-query CCDS DB by Nucleotide ID:NM_001357287Re-query CCDS DB by Protein ID:NP_001344216Link to BLAST:NP_001344216.1

Chromosomal Locations for CCDS 90433.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 85640536 85641116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85642413 85642526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85647716 85647944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85663179 85663306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85663408 85663431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85669534 85669782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85670390 85670530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85674074 85674130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85700641 85700674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1557 nt):
ATGGCCCTGGAGCAGCTCTGCGCGGTCCTCAAAGTGTTGCTGATAACAGTACTTGTCGTGGAAGGGATTG
CTGTGGCCCAAAAAACCCAAGATGGACAAAATATTGGAATCAAGCACATTCCTGCAACCCAGTGTGGTAT
TTGGGTTCGAACCAGCAATGGAGGTCATTTTGCTTCACCAAATTATCCTGACTCATATCCACCAAACAAG
GAGTGTATCTATATTTTGGAAGCTGCTCCTCGTCAACGAATAGAGCTGACCTTTGATGAACGCTATTATA
TAGAGCCATCATTCGAATGTCGGTTTGATCACTTGGAAATTCGAGACGGGCCATTTGGTTTTTCTCCTCT
TATAGATCGTTACTGTGGCATGAAAAGCCCTGCATTAATTAGGTCAACGGGAAGATTCATGTGGATTAAA
TTTAGTTCTGATGAAGAACTTGAAGGACTAGGATTTCGAGCAAAATACTCATTCATCCCAGATCCAGACT
TTACTTACCTTGGAGATTGCCAGTTTGAGCTCTCTGGAGCTGATGGAATAGTACGGTCTAGCCAAGTAGA
GCAAGAAGAGAAAACAAAGCCTGGCCAAGCAGTTGATTGCATATGGACAATTAAAGCTACTCCAAAAGCT
AAGATTTATTTGAGGTTCCTAGATTACCAAATGGAACACTCAAATGAATGCAAAAGAAATTTTGTGGCAG
TCTATGATGGAAGCAGTGCTATCGAAAATCTGAAGGCCAAGTTCTGCAGCACTGTGGCTAATGATGTCAT
GTTGAAAACAGGAGTCGGAGTGATCCGGATGTGGGCAGACGAAGGCAGTCGGCTTAGCAGGTTTAGGATG
CTCTTCACTTCCTTTGTGGAACCTCCCTGTACAAGCAGCACTTTCTTTTGCCATAGCAACATGTGCATCA
ACAATTCTTTAGTCTGTAATGGTGTTCAAAACTGTGCATACCCTTGGGATGAGAATCACTGTAAAGAAAA
GAAAAAAGCTGGACTATTTGAACAAATCACTAAAACTCATGGGACAATTATTGGCATTACATCAGGAATT
GTCTTGGTCCTTCTCATTATTTCTATTTTAGTACAAGTGAAACAGCCCCGGAAAAAGGTTATGGCTTGCA
AAACTGCATTTAATAAAACTGGGTTCCAGGAAGTATTTGATCCTCCTCATTATGAACTATTTTCACTAAG
AGAGAAAGAGATTTCTGCAGATCTGGCAGATTTGTCAGAAGAACTTGACAACTACCAGAAGTTGCGGCGC
TCCTCCACGGCCTCCCGGTGCATTCACGACCACCACTGTGGATCACAAGCATCCAGTGTGAAACAAAGCA
GGACCAACCTCAGTTCCATGGAACTTCCCTTCCGAAATGATTTTGCACAACCACAGCCAATGAAAACATT
TAATAGCACCTTCAAAAAAAGCAGCTACACTTTCAAACAAGCTCATGAGTGCCCTGAACAGGCTCTAGAG
GACAGAGTGATGGAGGAGATTCCCTGTGAAATTTATGTCAGAGGGCGAGACGATTCTGCACAAGCATCCA
TATCCATCGACTTTTAA

Translation (518 aa):
MALEQLCAVLKVLLITVLVVEGIAVAQKTQDGQNIGIKHIPATQCGIWVRTSNGGHFASPNYPDSYPPNK
ECIYILEAAPRQRIELTFDERYYIEPSFECRFDHLEIRDGPFGFSPLIDRYCGMKSPALIRSTGRFMWIK
FSSDEELEGLGFRAKYSFIPDPDFTYLGDCQFELSGADGIVRSSQVEQEEKTKPGQAVDCIWTIKATPKA
KIYLRFLDYQMEHSNECKRNFVAVYDGSSAIENLKAKFCSTVANDVMLKTGVGVIRMWADEGSRLSRFRM
LFTSFVEPPCTSSTFFCHSNMCINNSLVCNGVQNCAYPWDENHCKEKKKAGLFEQITKTHGTIIGITSGI
VLVLLIISILVQVKQPRKKVMACKTAFNKTGFQEVFDPPHYELFSLREKEISADLADLSEELDNYQKLRR
SSTASRCIHDHHCGSQASSVKQSRTNLSSMELPFRNDFAQPQPMKTFNSTFKKSSYTFKQAHECPEQALE
DRVMEEIPCEIYVRGRDDSAQASISIDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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