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Report for CCDS19582.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19582.1 Public Mus musculus 5 Cabp1 23 108 98 CCDS HistoryNCBI Gene:29867Re-query CCDS DB by CCDS ID:19582.1Re-query CCDS DB by GeneID:29867See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19582.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031519.13 ENSMUSP00000031519.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031519.13Link to Ensembl Protein Viewer:ENSMUSP00000031519.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031519Re-query CCDS DB by Protein ID:ENSMUSP00000031519
Original member Current member NCBI NM_013879.2 NP_038907.1 Accepted alive Link to Nucleotide Sequence:NM_013879.2Link to Protein Sequence:NP_038907.1Re-query CCDS DB by Nucleotide ID:NM_013879Re-query CCDS DB by Protein ID:NP_038907Link to BLAST:NP_038907.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038907.1 227 Q9JLK7-1 227 100% 0 0

Chromosomal Locations for CCDS 19582.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 115169123 115169148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115172759 115172906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115173115 115173224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115175379 115175522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115176240 115176270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115180792 115180971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115186012 115186056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGGGCAACTGCGTCAAGTCGCCACTAAGAAACCTCTCAAGAAAGATGCGCCAGGAGGAGAAGACCAGCT
ACATGGCGGTGCAGACAAGCGAGGACGGGCTGGCGGATGGCGGCGAGCTCCATGGACCACTCATGATGCT
GGCCCAGAACTGTGCGGTCATGCACAACCTGCTGGGTCCCGCCTGCATTTTTCTCCGAAAGGGTTTTGCT
GAGAACAGACAACCTGACAGATCGTTACGACCAGAGGAGATTGAAGAGCTCCGAGAGGCCTTCCGAGAAT
TTGACAAAGACAAGGATGGTTACATCAACTGCCGGGACCTGGGGAACTGCATGCGCACCATGGGCTACAT
GCCCACCGAGATGGAGCTCATTGAGCTGTCTCAGCAGATCAACATGAACCTGGGTGGCCACGTGGATTTT
GATGACTTTGTGGAACTGATGGGCCCTAAACTCCTGGCGGAGACGGCAGATATGATTGGTGTAAAGGAGC
TGAGAGACGCCTTTCGGGAGTTTGATACCAACGGTGACGGGGAGATAAGTACGAGCGAGCTTCGAGAGGC
CATGAGGAAGCTCCTGGGTCATCAGGTGGGACACCGGGACATAGAGGAAATTATCCGAGACGTGGACCTC
AATGGAGATGGACGAGTGGACTTTGAAGAGTTTGTCCGGATGATGTCTCGCTGA

Translation (227 aa):
MGNCVKSPLRNLSRKMRQEEKTSYMAVQTSEDGLADGGELHGPLMMLAQNCAVMHNLLGPACIFLRKGFA
ENRQPDRSLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDF
DDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDL
NGDGRVDFEEFVRMMSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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