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Report for CCDS21830.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21830.1 Public Mus musculus 7 Tufm 23 108 98 CCDS HistoryNCBI Gene:233870Re-query CCDS DB by CCDS ID:21830.1Re-query CCDS DB by GeneID:233870See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21830.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098048.5 ENSMUSP00000095656.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098048.5Link to Ensembl Protein Viewer:ENSMUSP00000095656.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000098048Re-query CCDS DB by Protein ID:ENSMUSP00000095656
Original member Current member NCBI NM_172745.3 NP_766333.1 Accepted alive Link to Nucleotide Sequence:NM_172745.3Link to Protein Sequence:NP_766333.1Re-query CCDS DB by Nucleotide ID:NM_172745Re-query CCDS DB by Protein ID:NP_766333Link to BLAST:NP_766333.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766333.1 452 Q8BFR5-1 452 100% 0 0

Chromosomal Locations for CCDS 21830.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 126487448 126487490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126487588 126487782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126488260 126488426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126488650 126488754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126488837 126489001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126489120 126489252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126489336 126489440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126489552 126489703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126489792 126489911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126490321 126490494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGGCGGCAGCCACTCTATTGCGAGCGACGCCCCGCTTCAGCGGTCTCTGCGCCAGCCCGACCCCATTTC
TGCAAGGTCGGCTGCGGCCGCTGAAGGCTCCCGCATCACCCTTCTTGTGTCGCGGCCTAGCTGTGGAGGC
CAAGAAGACTTATGTACGCGACAAGCCCCATGTGAATGTGGGTACCATCGGACATGTGGACCATGGCAAG
ACCACCCTGACTGCAGCCATCACGAAAATTCTAGCCGAGGGAGGTGGAGCTAAGTTCAAGAAGTACGAGG
AGATAGACAATGCCCCAGAGGAGCGAGCTCGGGGCATCACCATCAATGCAGCCCATGTGGAGTATAGCAC
TGCTGCCCGACACTATGCCCACACAGACTGTCCTGGTCATGCAGATTATGTTAAGAATATGATCACAGGC
ACTGCCCCCCTGGATGGCTGTATCCTGGTGGTGGCAGCTAATGATGGCCCCATGCCCCAGACCCGAGAGC
ACTTACTGCTAGCTAAACAGATTGGGGTAGAACATGTTGTGGTGTACGTGAACAAGGCAGACGCTGTCCA
GGACTCAGAGATGGTGGAGTTAGTCGAGCTGGAGATCCGGGAGCTGCTCACCGAGTTTGGCTATAAAGGA
GAGGAAACTCCAGTCATCGTAGGCTCGGCTCTCTGTGCCCTTGAGCAACGTGACCCTGAGCTAGGCGTGA
AGTCAGTGCAGAAGCTCCTGGATGCTGTGGACACCTACATCCCAGTGCCCACCCGGGACCTGGACAAGCC
CTTCCTGCTCCCTGTAGAGTCAGTCTACTCTATTCCTGGCCGGGGCACAGTGGTGACAGGTACATTAGAG
CGTGGCATTTTGAAGAAAGGAGATGAGTGTGAGTTGCTGGGACATAACAAGAACATCCGCACTGTGGTGA
CAGGCATTGAGATGTTCCACAAGAGCCTGGAGAGGGCTGAGGCAGGGGATAACCTGGGTGCTCTGGTCCG
AGGCTTAAAGCGCGAAGATTTGAGGCGTGGCTTGGTCATGGTCAAGCCAGGCTCCATCCAACCCCACCAG
AAGGTGGAGGCCCAGGTTTATATCCTCAGCAAGGAGGAAGGTGGCCGCCACAAACCCTTTGTATCTCATT
TCATGCCCGTCATGTTCTCCCTGACCTGGGACATGGCCTGTCGAGTCATCTTGCCTCCAGGGAAGGAACT
TGCCATGCCTGGAGAGGACTTGAAGCTTAGTCTAATCTTGCGGCAGCCCATGATCTTAGAGAAAGGCCAA
CGTTTCACCTTGAGGGATGGCAACAAGACCATTGGCACTGGCCTTGTTACTGATGTACCAGCCATGACTG
AGGAGGACAAGAACATCAAGTGGAGCTGA

Translation (452 aa):
MAAATLLRATPRFSGLCASPTPFLQGRLRPLKAPASPFLCRGLAVEAKKTYVRDKPHVNVGTIGHVDHGK
TTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITG
TAPLDGCILVVAANDGPMPQTREHLLLAKQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG
EETPVIVGSALCALEQRDPELGVKSVQKLLDAVDTYIPVPTRDLDKPFLLPVESVYSIPGRGTVVTGTLE
RGILKKGDECELLGHNKNIRTVVTGIEMFHKSLERAEAGDNLGALVRGLKREDLRRGLVMVKPGSIQPHQ
KVEAQVYILSKEEGGRHKPFVSHFMPVMFSLTWDMACRVILPPGKELAMPGEDLKLSLILRQPMILEKGQ
RFTLRDGNKTIGTGLVTDVPAMTEEDKNIKWS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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