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Report for CCDS22220.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22220.1 Public Mus musculus 8 Rnf122 23 108 98 CCDS HistoryNCBI Gene:68867Re-query CCDS DB by CCDS ID:22220.1Re-query CCDS DB by GeneID:68867See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22220.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046941.7 ENSMUSP00000040478.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046941.7Link to Ensembl Protein Viewer:ENSMUSP00000040478.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000046941Re-query CCDS DB by Protein ID:ENSMUSP00000040478
Original member Current member NCBI NM_175136.3 NP_780345.1 Accepted alive Link to Nucleotide Sequence:NM_175136.3Link to Protein Sequence:NP_780345.1Re-query CCDS DB by Nucleotide ID:NM_175136Re-query CCDS DB by Protein ID:NP_780345Link to BLAST:NP_780345.1

Chromosomal Locations for CCDS 22220.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 31112148 31112172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31118431 31118587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31124852 31124897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31125166 31125207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31128255 31128334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31128579 31128693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (465 nt):
ATGCACCCATTCCAGTGGTGTAACGGGTGTTTCTGTGGCCTGGGACTGGTTAGTACCAACAAGTCCTGCT
CAATGCCACCGATCAGTTTCCAAGACCTTCCCCTCAATATCTACATGGTCATCTTCGGCACAGGCATCTT
CGTCTTCATGCTTAGCCTCATCTTCTGCTGCTACTTCATCAGCAAACTCCGGAACCAGGCTCAGAGCGAG
CGATACGGCTACAAGGAGGTGGTGCTTAAAGGTGATGCTAAGAAGTTACAGCTCTATGGGACCTGTGCAG
TTTGCCTGGAAGACTTCAAGGGGAAGGATGAACTAGGCGTGCTTCCATGCCAGCATGCCTTTCACCGCAA
GTGTCTGGTGAAGTGGCTAGAAGTACGTTGTGTCTGCCCCATGTGCAACAAGCCCATCGCGGGCCCCACG
GAGACCTCGCAGAGCATCGGGATCCTGCTGGATGAACTGGTGTAA

Translation (154 aa):
MHPFQWCNGCFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGTGIFVFMLSLIFCCYFISKLRNQAQSE
RYGYKEVVLKGDAKKLQLYGTCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIAGPT
ETSQSIGILLDELV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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