NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25489.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25489.1 Public Mus musculus 11 Tmem101 23 108 98 CCDS HistoryNCBI Gene:76547Re-query CCDS DB by CCDS ID:25489.1Re-query CCDS DB by GeneID:76547See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25489.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021296.6 ENSMUSP00000021296.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021296.6Link to Ensembl Protein Viewer:ENSMUSP00000021296.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000021296Re-query CCDS DB by Protein ID:ENSMUSP00000021296
Original member Current member NCBI NM_029649.2 NP_083925.2 Accepted alive Link to Nucleotide Sequence:NM_029649.2Link to Protein Sequence:NP_083925.2Re-query CCDS DB by Nucleotide ID:NM_029649Re-query CCDS DB by Protein ID:NP_083925Link to BLAST:NP_083925.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083925.2 257 Q91VP7 257 100% 0 0

Chromosomal Locations for CCDS 25489.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 102153286 102153594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102154557 102154703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102155724 102155904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102156208 102156344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGGCTTCGAAGATTGGATCGAGACGCTGGATGCTGCAGCTGATCATGCAGCTGGGTTCCGTGCTGCTCA
CGCGCTGCCCCTTTTGGGGCTGCTTCAGCCAACTTATGTTGTACGCTGAAAGGGCCGAGGCGCGCCGGAA
GCCCGACATCCCAGTGCCTTATCTATATTTCGACATGGGGGCAGCTGTGTTGTGTGCTAGCTTCATGTCC
TTCGGAGTGAAGCGGCGTTGGTTTGCGTTGGGCGCCGCGCTGCAGCTAGCCATCAGCACCTACACCGCTT
ACATCGGGGGCTATGTCCACTACGGGGACTGGCTAAAGGTCCGTATGTATTCTCGCACAGTTGCCATCAT
TGGCGGCTTTCTGGTGCTGGCCAGTGGGGCTGGAGAGCTGTACCGTCGAAAGCCCCGAAGCCGTTCCCTG
CAGTCCACTGGCCAAGTGTTCCTGGGCATCTACCTCATTTGTGTGGCCTACTCGCTGCAGCACAGCAAGG
AGGACCGGCTGGCGTACCTGAACCATCTTCCAGGAGGGGAGCTGATGGTCCAGCTGTTCTTCGTGCTTTA
TGGGGTCCTGGCCCTGGCCTTCTTGTCGGGTTACTATGTGACGCTGGCCGCCCAGATCCTGGCCGTGTTG
TTACCTCCTGTCATGCTGCTTATCGACGGCAACGTCTCCTATTGGCACAACACACGACGCGTCGAGTTCT
GGAACCAGATGAAGCTACTCGGCGAGAGTGTGGGCATCTTTGGGGCTGCCGTCATCTTGGCTACTGATGG
CTGA

Translation (257 aa):
MASKIGSRRWMLQLIMQLGSVLLTRCPFWGCFSQLMLYAERAEARRKPDIPVPYLYFDMGAAVLCASFMS
FGVKRRWFALGAALQLAISTYTAYIGGYVHYGDWLKVRMYSRTVAIIGGFLVLASGAGELYRRKPRSRSL
QSTGQVFLGIYLICVAYSLQHSKEDRLAYLNHLPGGELMVQLFFVLYGVLALAFLSGYYVTLAAQILAVL
LPPVMLLIDGNVSYWHNTRRVEFWNQMKLLGESVGIFGAAVILATDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH