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Report for CCDS25525.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25525.1 Public Mus musculus 11 Arf2 23 108 98 CCDS HistoryNCBI Gene:11841Re-query CCDS DB by CCDS ID:25525.1Re-query CCDS DB by GeneID:11841See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25525.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057921.9 ENSMUSP00000051814.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057921.9Link to Ensembl Protein Viewer:ENSMUSP00000051814.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000057921Re-query CCDS DB by Protein ID:ENSMUSP00000051814
Original member Current member EBI ENSMUST00000063347.11 ENSMUSP00000102622.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063347.11Link to Ensembl Protein Viewer:ENSMUSP00000102622.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000063347Re-query CCDS DB by Protein ID:ENSMUSP00000102622
Original member Current member NCBI NM_001304574.1 NP_001291503.1 Accepted alive Link to Nucleotide Sequence:NM_001304574.1Link to Protein Sequence:NP_001291503.1Re-query CCDS DB by Nucleotide ID:NM_001304574Re-query CCDS DB by Protein ID:NP_001291503Link to BLAST:NP_001291503.1
Original member Current member NCBI NM_007477.5 NP_031503.1 Accepted alive Link to Nucleotide Sequence:NM_007477.5Link to Protein Sequence:NP_031503.1Re-query CCDS DB by Nucleotide ID:NM_007477Re-query CCDS DB by Protein ID:NP_031503Link to BLAST:NP_031503.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291503.1 181 Q8BSL7 181 100% 0 0
NP_031503.1 181 Q8BSL7 181 100% 0 0

Chromosomal Locations for CCDS 25525.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 103969098 103969245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103972953 103973063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103981694 103981818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103983588 103983749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (546 nt):
ATGGGGAATGTCTTTGAAAAGCTGTTTAAAAGCCTATTTGGGAAAAAGGAAATGCGGATTCTCATGGTGG
GCTTAGATGCAGCTGGCAAAACGACGATCTTGTACAAATTGAAGCTAGGAGAGATTGTGACAACCATCCC
TACCATAGGTTTCAATGTGGAGACAGTAGAGTACAAAAACATCAGCTTCACAGTCTGGGATGTTGGTGGC
CAGGACAAAATTAGACCTTTGTGGCGACATTACTTCCAGAACACTCAAGGTCTGATTTTCGTGGTTGACA
GTAATGACCGAGAGCGGGTCAATGAGGCCCGGGAAGAATTGACCAGAATGCTAGCAGAAGATGAGCTCAG
AGATGCAGTCTTGTTGGTGTTTGTAAACAAACAGGATCTTCCTAATGCTATGAATGCAGCAGAGATCACA
GACAAGCTTGGCTTACACTCCCTTCGCCAGAGAAACTGGTACATTCAGGCTACCTGTGCGACCAGTGGAG
ATGGGCTTTACGAAGGCCTGGACTGGCTCTCCAACCAGCTCAAAAACCAGAAGTGA

Translation (181 aa):
MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGG
QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEIT
DKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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