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Report for CCDS29284.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29284.1 Public Mus musculus 18 Ppargc1b 23 108 98 CCDS HistoryNCBI Gene:170826Re-query CCDS DB by CCDS ID:29284.1Re-query CCDS DB by GeneID:170826See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29284.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075299.12 ENSMUSP00000074771.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075299.12Link to Ensembl Protein Viewer:ENSMUSP00000074771.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000075299Re-query CCDS DB by Protein ID:ENSMUSP00000074771
Original member Current member NCBI NM_133249.3 NP_573512.1 Accepted alive Link to Nucleotide Sequence:NM_133249.3Link to Protein Sequence:NP_573512.1Re-query CCDS DB by Nucleotide ID:NM_133249Re-query CCDS DB by Protein ID:NP_573512Link to BLAST:NP_573512.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_573512.1 1014 Q8VHJ7-1 1014 100% 0 0

Chromosomal Locations for CCDS 29284.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 61298683 61298783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61299586 61299740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61302619 61302740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61304708 61304783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61307207 61308014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61309033 61309094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61309646 61309682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61310407 61311508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61312154 61312270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61315737 61315949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61323135 61323308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61400290 61400367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3045 nt):
ATGGCGGGGAACGACTGCGGCGCGCTGCTGGATGAAGAGCTCTCGTCCTTCTTCCTCAACTATCTCTCTG
ACACGCAGGGTGGGGACTCTGGAGAGGAACAGCTGTGTGCTGACTTGCCAGAGCTTGACCTCTCCCAGCT
GGACGCCAGTGACTTTGACTCAGCCACGTGCTTTGGGGAGCTGCAGTGGTGCCCGGAGACCTCAGAGACA
GAGCCCAGCCAGTACAGCCCCGATGACTCCGAGCTCTTCCAGATTGACAGTGAGAATGAAGCTCTCTTGG
CTGCGCTTACGAAGACCCTGGATGACATCCCCGAAGACGATGTGGGGCTGGCTGCCTTCCCAGAACTGGA
TGAAGGCGACACACCATCCTGCACCCCAGCCTCACCTGCCCCCTTATCTGCACCCCCCAGCCCCACCCTG
GAGAGGCTTCTGTCCCCAGCGTCTGACGTGGACGAGCTTTCACTGCTACAGAAGCTCCTCCTGGCCACAT
CCTCCCCAACAGCAAGCTCTGACGCTCTGAAGGACGGGGCCACCTGGTCCCAGACCAGCCTCAGTTCCAG
AAGTCAGCGGCCTTGTGTCAAGGTGGATGGCACCCAGGATAAGAAGACCCCCACACTGCGGGCTCAGAGC
CGGCCTTGTACGGAACTGCATAAGCACCTCACTTCGGTGCTGCCCTGTCCCAGAGTGAAAGCCTGCTCCC
CAACTCCGCACCCGAGCCCTCGGCTCCTCTCCAAAGAGGAGGAGGAGGAGGTGGGGGAGGATTGCCCAAG
CCCTTGGCCGACTCCAGCCTCGCCCCAAGACTCCCTAGCACAGGACACGGCCAGCCCCGACAGTGCCCAG
CCTCCCGAGGAGGATGTGAGGGCCATGGTACAGCTCATTCGCTACATGCATACCTACTGCCTGCCTCAGA
GGAAGCTGCCCCAACGGGCCCCAGAGCCAATCCCCCAGGCCTGCAGCAGCCTCTCCAGGCAGGTTCAACC
CCGATCCCGGCATCCCCCCAAAGCCTTCTGGACTGAGTTCTCTATCCTAAGGGAACTTCTGGCCCAAGAT
ATCCTCTGTGATGTTAGCAAGCCCTACCGCCTGGCCATACCTGTCTATGCTTCCCTCACACCTCAGTCCA
GGCCCAGGCCCCCCAAGGACAGTCAGGCCTCCCCTGCCCACTCTGCCATGGCAGAAGAGGTGAGAATCAC
TGCTTCCCCCAAGAGCACCGGGCCTAGACCCAGCCTGCGTCCTCTGAGGCTGGAGGTGAAACGGGATGTT
AACAAGCCTACAAGGCAAAAGCGGGAGGAAGATGAGGAGGAGGAGGAGGAAGAAGAAGAAGAGGAAGAAG
AAAAAGAAGAGGAAGAAGAGGAGTGGGGCAGGAAGAGACCAGGTCGTGGCCTGCCATGGACCAAACTAGG
GAGGAAGATGGACAGCTCCGTGTGCCCCGTGCGGCGCTCCAGGAGACTGAATCCAGAGCTGGGTCCCTGG
CTGACATTCACTGATGAGCCCTTAGGTGCTCTGCCCTCGATGTGCCTGGATACAGAGACCCACAACCTGG
AGGAAGACCTGGGCAGCCTCACAGACAGTAGTCAAGGCCGGCAGCTCCCCCAGGGATCCCAGATCCCCGC
CCTGGAAAGCCCCTGTGAGAGTGGGTGCGGAGACACAGATGAAGATCCAAGCTGCCCACAGCCCACTTCC
AGAGACTCCTCCAGGTGCCTCATGCTGGCCTTGTCACAAAGCGACTCTCTTGGCAAGAAGAGCTTTGAGG
AGTCCCTGACGGTGGAGCTTTGCGGCACGGCAGGACTCACGCCACCCACCACACCTCCATACAAGCCAAT
GGAGGAGGACCCCTTCAAGCCAGACACCAAGCTCAGCCCAGGCCAAGACACAGCTCCCAGCCTTCCCTCC
CCCGAGGCTCTTCCGCTCACAGCCACCCCAGGAGCTTCCCACAAGCTGCCCAAGAGGCACCCAGAGCGAA
GCGAGCTCCTGTCCCATTTGCAGCATGCCACAACCCAACCAGTCTCACAGGCTGGCCAGAAGCGCCCCTT
CTCCTGCTCCTTTGGAGACCACGACTACTGCCAGGTGCTCAGGCCAGAGGCTGCCCTGCAGAGGAAGGTG
CTGCGGTCCTGGGAGCCAATCGGGGTCCACCTTGAAGACTTGGCCCAGCAGGGTGCCCCTCTGCCAACGG
AAACAAAGGCCCCTAGGAGGGAGGCAAACCAGAACTGTGACCCTACCCACAAGGACAGCATGCAGCTAAG
AGACCATGAGATCCGTGCCAGTCTCACAAAGCACTTTGGGCTGCTGGAGACTGCTCTGGAAGGTGAAGAC
CTGGCGTCCTGTAAAAGCCCGGAGTATGACACCGTATTTGAGGACAGCAGCAGCAGCAGTGGCGAGAGTA
GCTTCCTGCTTGAGGAGGAGGAGGAAGAGGAGGAGGGAGGGGAAGAGGACGATGAAGGAGAGGACTCAGG
GGTCAGCCCTCCCTGCTCTGATCACTGCCCCTACCAGAGCCCACCCAGTAAGGCCAGTCGGCAGCTCTGC
TCCCGAAGCCGCTCCAGTTCCGGCTCCTCGTCCTGCAGCTCCTGGTCACCAGCCACCCGGAAGAACTTCA
GACGTGAGAGCAGAGGGCCCTGTTCAGATGGAACCCCAAGCGTCCGGCATGCCAGGAAGCGGCGGGAAAA
GGCCATCGGTGAAGGCCGTGTGGTATACATTCGAAATCTCTCCAGTGACATGAGCTCTCGGGAACTAAAG
AAGCGCTTTGAGGTGTTCGGTGAGATTGTAGAGTGCCAGGTGCTGACGAGAAGTAAAAGAGGCCAGAAGC
ACGGTTTTATCACCTTCCGGTGTTCAGAGCACGCTGCCCTGTCCGTGAGGAACGGCGCCACCCTGAGAAA
GCGCAATGAGCCCTCCTTCCACCTGAGCTATGGAGGGCTCCGGCACTTCCGTTGGCCCAGATACACTGAC
TATGATCCCACATCTGAGGAGTCCCTTCCCTCATCTGGGAAAAGCAAGTACGAAGCCATGGATTTTGACA
GCTTACTGAAAGAGGCCCAGCAGAGCCTGCATTGA

Translation (1014 aa):
MAGNDCGALLDEELSSFFLNYLSDTQGGDSGEEQLCADLPELDLSQLDASDFDSATCFGELQWCPETSET
EPSQYSPDDSELFQIDSENEALLAALTKTLDDIPEDDVGLAAFPELDEGDTPSCTPASPAPLSAPPSPTL
ERLLSPASDVDELSLLQKLLLATSSPTASSDALKDGATWSQTSLSSRSQRPCVKVDGTQDKKTPTLRAQS
RPCTELHKHLTSVLPCPRVKACSPTPHPSPRLLSKEEEEEVGEDCPSPWPTPASPQDSLAQDTASPDSAQ
PPEEDVRAMVQLIRYMHTYCLPQRKLPQRAPEPIPQACSSLSRQVQPRSRHPPKAFWTEFSILRELLAQD
ILCDVSKPYRLAIPVYASLTPQSRPRPPKDSQASPAHSAMAEEVRITASPKSTGPRPSLRPLRLEVKRDV
NKPTRQKREEDEEEEEEEEEEEEEKEEEEEEWGRKRPGRGLPWTKLGRKMDSSVCPVRRSRRLNPELGPW
LTFTDEPLGALPSMCLDTETHNLEEDLGSLTDSSQGRQLPQGSQIPALESPCESGCGDTDEDPSCPQPTS
RDSSRCLMLALSQSDSLGKKSFEESLTVELCGTAGLTPPTTPPYKPMEEDPFKPDTKLSPGQDTAPSLPS
PEALPLTATPGASHKLPKRHPERSELLSHLQHATTQPVSQAGQKRPFSCSFGDHDYCQVLRPEAALQRKV
LRSWEPIGVHLEDLAQQGAPLPTETKAPRREANQNCDPTHKDSMQLRDHEIRASLTKHFGLLETALEGED
LASCKSPEYDTVFEDSSSSSGESSFLLEEEEEEEEGGEEDDEGEDSGVSPPCSDHCPYQSPPSKASRQLC
SRSRSSSGSSSCSSWSPATRKNFRRESRGPCSDGTPSVRHARKRREKAIGEGRVVYIRNLSSDMSSRELK
KRFEVFGEIVECQVLTRSKRGQKHGFITFRCSEHAALSVRNGATLRKRNEPSFHLSYGGLRHFRWPRYTD
YDPTSEESLPSSGKSKYEAMDFDSLLKEAQQSLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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