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Report for CCDS29305.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29305.1 Public Mus musculus 18 Nedd4l 23 108 98 CCDS HistoryNCBI Gene:83814Re-query CCDS DB by CCDS ID:29305.1Re-query CCDS DB by GeneID:83814See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29305.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080418.6 ENSMUSP00000079280.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080418.6Link to Ensembl Protein Viewer:ENSMUSP00000079280.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000080418Re-query CCDS DB by Protein ID:ENSMUSP00000079280
Original member Current member EBI ENSMUST00000224347.2 ENSMUSP00000153052.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224347.2Link to Ensembl Protein Viewer:ENSMUSP00000153052.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000224347Re-query CCDS DB by Protein ID:ENSMUSP00000153052
Original member Current member EBI ENSMUST00000226058.1 ENSMUSP00000153526.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226058.1Link to Ensembl Protein Viewer:ENSMUSP00000153526.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226058Re-query CCDS DB by Protein ID:ENSMUSP00000153526
Original member Current member EBI ENSMUST00000237384.1 ENSMUSP00000158238.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237384.1Link to Ensembl Protein Viewer:ENSMUSP00000158238.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237384Re-query CCDS DB by Protein ID:ENSMUSP00000158238
Original member NCBI NM_031881.2 NP_114087.2 Updated not alive Link to Nucleotide Sequence:NM_031881.2Link to Protein Sequence:NP_114087.2Re-query CCDS DB by Nucleotide ID:NM_031881Re-query CCDS DB by Protein ID:NP_114087
Current member NCBI NM_031881.3 NP_114087.2 Accepted alive Link to Nucleotide Sequence:NM_031881.3Link to Protein Sequence:NP_114087.2Re-query CCDS DB by Nucleotide ID:NM_031881Re-query CCDS DB by Protein ID:NP_114087Link to BLAST:NP_114087.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114087.2 855 Q8CFI0-2 855 99.883% 0 1

Chromosomal Locations for CCDS 29305.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 65155271 65155317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65155646 65155748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65157845 65158011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65161515 65161650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65162995 65163171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65165572 65165646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65167514 65167573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65172275 65172406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65172916 65173035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65174045 65174242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65178919 65178996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65181328 65181382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65186326 65186384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65191437 65191502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65193076 65193305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65195060 65195181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65195915 65195985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65198631 65198726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65203876 65203949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65205633 65205693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65208049 65208108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65208392 65208499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65209653 65209749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65210263 65210335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65212784 65212886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2568 nt):
ATGGAGAGACCCTATACATTTAAGGATTTTCTCCTGCGACCTAGAAGTCATAAATCTCGAGTCAAGGGGT
TTTTGAGGTTGAAAATGGCCTACATGCCGAAAAACGGAGGTCAGGATGAAGAAAACAGCGAGCAGAGGGA
TGACATGGAGCATGGATGGGAAGTGGTTGACTCCAACGACTCAGCTTCCCAGCACCAGGAGGAGCTCCCC
CCTCCTCCCCTGCCGCCAGGATGGGAAGAGAAAGTGGACAATTTAGGCCGAACTTACTATGTCAACCACA
ACAACAGGAGTACTCAGTGGCACCGACCCAGCTTGATGGATGTGTCCTCGGAATCAGACAATAACATCAG
GCAGATCAACCAGGAGGCTGCACACCGACGCTTCCGCTCTCGGAGGCACATTAGTGAAGATTTGGAGCCT
GAGGCCTCTGAAGGCGGTGGAGAAGGCCCTGAGCCTTGGGAGACCATTTCAGAGGAAATGAACATGGCAG
GAGATTCTCTCAGCCTGGCTCTGCCCCCACCGCCTGCCTCCCCAGTGTCCCGGACCAGCCCCCAGGAGCT
GTCGGAAGAAGTGAGCCGAAGGTTGCAGATCACTCCGGACTCCAACGGGGAACAGTTCAGTTCTCTGATT
CAGAGAGAGCCCTCGTCAAGGCTTCGGTCCTGCAGTGTTACCGACACGGTTGCTGAGCAAGCTCACCTTC
CACCGCCCAGCACCCCAACTAGGCGAGCCCGTTCGTCAACTGTCACGGGTGGTGAGGAATCCACGCCATC
AGTGGCCTATGTACATACCACGCCGGGCCTGCCTTCAGGCTGGGAAGAAAGAAAGGATGCAAAGGGACGC
ACATACTATGTCAATCATAACAATCGAACCACAACTTGGACTCGGCCAATCATGCAGCTTGCAGAAGACG
GTGCCTCCGGATCAGCCACAAACAGTAACAACCACCTAGTCGAACCCCAGATCCGCCGGCCCCGTAGCCT
CAGCTCGCCAACAGTAACTTTATCTGCCCCACTGGAGGGTGCCAAGGATTCACCCATCCGCCGTGCCGTG
AAAGATACCCTTTCCAATCCACAGTCCCCTCAGCCATCACCTTACAACTCCCCCAAACCACAACACAAAG
TCACACAGAGCTTCCTGCCACCAGGCTGGGAGATGAGGATAGCCCCCAACGGCCGACCCTTCTTCATTGA
CCATAACACAAAGACTACAACCTGGGAAGATCCACGGTTGAAATTTCCAGTACACATGCGGTCAAAAGCA
TCTTTAAACCCCAATGACCTGGGCCCTCTTCCTCCTGGCTGGGAAGAGAGGATCCACTTGGATGGCCGCA
CGTTTTACATTGACCATAATAGTAAAATTACCCAGTGGGAAGATCCAAGACTACAGAACCCAGCCATCAC
TGGTCCGGCTGTTCCGTACTCCAGAGAGTTTAAGCAGAAATACGACTACTTTAGGAAGAAATTAAAGAAG
CCTGCTGATATTCCAAACAGGTTTGAAATGAAACTTCACAGAAACAACATATTTGAAGAGTCCTATCGGA
GGATCATGTCTGTAAAGAGACCTGACGTCCTAAAGGCTAGGCTGTGGATTGAGTTTGAATCAGAGAAAGG
CCTGGACTATGGGGGCGTGGCCAGAGAATGGTTCTTCTTACTGTCCAAAGAGATGTTTAACCCCTACTAT
GGCCTCTTCGAGTACTCTGCCACGGACAACTACACACTTCAGATCAATCCCAACTCAGGCCTCTGTAATG
AAGACCATTTGTCCTATTTCACCTTCATTGGAAGAGTTGCTGGCCTAGCGGTGTTTCATGGGAAACTCTT
AGATGGATTCTTCATTCGACCATTCTACAAGATGATGCTGGGGAAGCAGATAACGCTGAACGACATGGAG
TCCGTGGACAGCGAGTACTACAACTCTTTGAAGTGGATCTTAGAAAACGACCCCACGGAACTTGACCTCA
TGTTCTGCATAGACGAAGAGAACTTTGGGCAGACATACCAAGTGGATCTGAAGCCCAACGGGTCAGAAAT
AATGGTAACCAATGAGAACAAACGAGAATACATTGACTTAGTCATCCAGTGGAGATTTGTGAACAGGGTC
CAGAAGCAAATGAATGCCTTCTTGGAGGGATTTACAGAACTTCTTCCAATCGACTTGATTAAAATTTTTG
ATGAAAATGAGCTGGAGTTGCTGATGTGCGGCCTTGGTGATGTCGACGTGAACGACTGGAGACAGCACTC
TATTTACAAGAACGGCTACTGCCCCAACCACCCTGTCATCCAGTGGTTCTGGAAGGCCGTGCTCCTGATG
GATGCTGAGAAGCGCATCCGGTTACTACAGTTTGTCACAGGCACCTCCAGAGTACCCATGAATGGATTTG
CCGAACTCTATGGTTCCAATGGTCCTCAGCTGTTTACAATAGAGCAATGGGGCAGTCCCGAAAAACTACC
CAGAGCTCATACATGCTTTAATCGCCTTGATTTACCTCCATATGAAACCTTTGAAGATTTACGGGAGAAA
CTTCTCATGGCTGTGGAAAACGCTCAAGGCTTCGAAGGTGTGGATTAA

Translation (855 aa):
MERPYTFKDFLLRPRSHKSRVKGFLRLKMAYMPKNGGQDEENSEQRDDMEHGWEVVDSNDSASQHQEELP
PPPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPSLMDVSSESDNNIRQINQEAAHRRFRSRRHISEDLEP
EASEGGGEGPEPWETISEEMNMAGDSLSLALPPPPASPVSRTSPQELSEEVSRRLQITPDSNGEQFSSLI
QREPSSRLRSCSVTDTVAEQAHLPPPSTPTRRARSSTVTGGEESTPSVAYVHTTPGLPSGWEERKDAKGR
TYYVNHNNRTTTWTRPIMQLAEDGASGSATNSNNHLVEPQIRRPRSLSSPTVTLSAPLEGAKDSPIRRAV
KDTLSNPQSPQPSPYNSPKPQHKVTQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPRLKFPVHMRSKA
SLNPNDLGPLPPGWEERIHLDGRTFYIDHNSKITQWEDPRLQNPAITGPAVPYSREFKQKYDYFRKKLKK
PADIPNRFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFESEKGLDYGGVAREWFFLLSKEMFNPYY
GLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDME
SVDSEYYNSLKWILENDPTELDLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWRFVNRV
QKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLM
DAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQWGSPEKLPRAHTCFNRLDLPPYETFEDLREK
LLMAVENAQGFEGVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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