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Report for CCDS40128.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40128.2 Public Mus musculus 7 Sult1a1 23 108 98 CCDS HistoryNCBI Gene:20887Re-query CCDS DB by CCDS ID:40128.2Re-query CCDS DB by GeneID:20887See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 40128.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106373.8 ENSMUSP00000101981.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106373.8Link to Ensembl Protein Viewer:ENSMUSP00000101981.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106373Re-query CCDS DB by Protein ID:ENSMUSP00000101981
Original member NCBI NM_133670.2 NP_598431.2 Updated not alive Link to Nucleotide Sequence:NM_133670.2Link to Protein Sequence:NP_598431.2Re-query CCDS DB by Nucleotide ID:NM_133670Re-query CCDS DB by Protein ID:NP_598431
Current member NCBI NM_133670.3 NP_598431.2 Accepted alive Link to Nucleotide Sequence:NM_133670.3Link to Protein Sequence:NP_598431.2Re-query CCDS DB by Nucleotide ID:NM_133670Re-query CCDS DB by Protein ID:NP_598431Link to BLAST:NP_598431.2

Chromosomal Locations for CCDS 40128.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 126673143 126673255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126673417 126673597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126674087 126674181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126674271 126674397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126675049 126675146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126675228 126675353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126675444 126675583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126676302 126676318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGGCTCAGAACCCCAGCAACATGGAGCCCTTGCGTAAACCACTGGTGCCTGTGAAGGGAATCCCACTCA
TCAAATACTTTGCGGAGACAATGGAGCAACTGCAGAACTTCACAGCCTGGCCTGATGATGTGCTCATCAG
CACGTACCCAAAGTCTGGTACTACCTGGATGAGTGAGATCATGGATATGATCTATCAGGGTGGCAAGCTA
GATAAGTGTGGCCGGGCCCCCGTCTATGCCCGGATACCCTTCCTTGAGTTCAGCTGCCCAGGGGTCCCCC
CAGGTCTTGAAACTCTGAAAGAGACACCAGCCCCACGGATCATTAAGACACATCTGCCCTTGTCCTTACT
CCCTCAGAGTCTGCTGGATCAAAAGATCAAGGTGATCTACGTTGCCCGAAATGCAAAGGATGTGGTTGTC
TCCTATTATAACTTCTACAAAATGGCCAAGCTGCACCCTGACCCAGGCACCTGGGAAAGCTTCTTGGAGA
ACTTCATGGATGGGAAAGTGTCCTATGGGTCGTGGTACCAGCACGTGAAGGAGTGGTGGGAGCTGAGACG
CACTCACCCTGTTCTCTATCTCTTCTATGAAGACATGAAGGAGAATCCCAAAAGGGAGATCAAGAAGATT
CTAGAGTTTCTGGGGCGCTCTCTACCTGAGGAGACTGTGGATTTAATTGTTCACCACACATCCTTCAAGA
AAATGAAGGAGAACCCCATGGCTAACTACACAACCATCCCAACTGAAGTTATGGACCACACTATTTCTCC
CTTCATGAGGAAAGGTACCATTGGGGACTGGAAAAATACCTTCACTGTAGCCCAGAGTGAGCACTTTGAT
GCCCACTATGCCAAGATAATGACAGGTTGTGACTTCACGTTCCGCTGTCAAATATGA

Translation (298 aa):
MAQNPSNMEPLRKPLVPVKGIPLIKYFAETMEQLQNFTAWPDDVLISTYPKSGTTWMSEIMDMIYQGGKL
DKCGRAPVYARIPFLEFSCPGVPPGLETLKETPAPRIIKTHLPLSLLPQSLLDQKIKVIYVARNAKDVVV
SYYNFYKMAKLHPDPGTWESFLENFMDGKVSYGSWYQHVKEWWELRRTHPVLYLFYEDMKENPKREIKKI
LEFLGRSLPEETVDLIVHHTSFKKMKENPMANYTTIPTEVMDHTISPFMRKGTIGDWKNTFTVAQSEHFD
AHYAKIMTGCDFTFRCQI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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