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Report for CCDS49949.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49949.1 Public Mus musculus 17 Wtap 23 108 98 CCDS HistoryNCBI Gene:60532Re-query CCDS DB by CCDS ID:49949.1Re-query CCDS DB by GeneID:60532See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49949.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159986.7 ENSMUSP00000123961.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159986.7Link to Ensembl Protein Viewer:ENSMUSP00000123961.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159986Re-query CCDS DB by Protein ID:ENSMUSP00000123961
Original member Current member EBI ENSMUST00000160781.7 ENSMUSP00000124138.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160781.7Link to Ensembl Protein Viewer:ENSMUSP00000124138.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160781Re-query CCDS DB by Protein ID:ENSMUSP00000124138
Original member Current member NCBI NM_001113532.1 NP_001107004.1 Accepted alive Link to Nucleotide Sequence:NM_001113532.1Link to Protein Sequence:NP_001107004.1Re-query CCDS DB by Nucleotide ID:NM_001113532Re-query CCDS DB by Protein ID:NP_001107004Link to BLAST:NP_001107004.1
Original member Current member NCBI NM_175394.2 NP_780603.1 Accepted alive Link to Nucleotide Sequence:NM_175394.2Link to Protein Sequence:NP_780603.1Re-query CCDS DB by Nucleotide ID:NM_175394Re-query CCDS DB by Protein ID:NP_780603Link to BLAST:NP_780603.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107004.1 151 Q9ER69-2 151 100% 0 0
NP_780603.1 151 Q9ER69-2 151 100% 0 0

Chromosomal Locations for CCDS 49949.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 12975292 12975474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12980822 12980949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12981750 12981808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12983457 12983512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12985916 12985945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (456 nt):
ATGACCAACGAAGAACCTCTTCCTAAAAAGGTCCGACTGAGTGAAACAGACTTCAAAGTTATGGCACGGG
ATGAGTTAATTCTAAGATGGAAACAATATGAAGCATATGTTCAAGCTTTGGAGGGAAAGTACACAGATCT
TAATTCAAACGATGTGACTGGTTTAAGGGAATCTGAAGAAAAACTAAAGCAGCAACAGCAGGAGTCTGCA
CGCAGGGAGAACATTCTTGTCATGCGGCTAGCAACCAAAGAGCAGGAGATGCAAGAGTGCACCACTCAAA
TCCAGTACCTCAAGCAAGTTCAGCAGCCGAGTGTGGCCCAACTGAGATCAACAATGGTAGACCCAGCAAT
CAACTTGTTTTTCCTAAAAATGAAAGGTGAACTGGAACAGACTAAAGACAAACTGGAACAAGCCCAAAAT
GAACTGAGTGCCTGGAAGTTTACGCCTGATAGGTAA

Translation (151 aa):
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEEKLKQQQQESA
RRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQAQN
ELSAWKFTPDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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